RNA id: TU89256


Basic Information

Item Value
RNA id TU89256
length 4917
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G71371
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 20073025 ~ 20078009 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTTTTGTGGGATGATTGATCTATATGAAAGagtttattaacattttcatgtgAAATGCATGTCTTCAGGTGCAAATGGACTTGATTGTCACATTTTACCCCAATTCccacattacattaaatttacCCATTACACTCTGTGGCCACAAACCTGATTCTGTCACAATTTTCTCACACATGTAACATGCACATATAAATACTGGAATATTGAAATTACACCAATGTCAGCTTTTCCCAATTACAAATGATCAATGGTTGTGTATTATTGAATGCTTGATTAGTGAAAATAAAGATATTTGGTTTTAATGCAAGCCTACATGATGACCAATATGCAAATATGCCGAATTTGGAGACAAGCCAGAAACcattataattaaatcatttgagCAGAAGGGGACAAACACTGGATTGAGGATAGGAAGGCTGGATATTTAACAGCAGTGACGTATTACTGTGCATGACTTCCAAATCATCATATATTTGCTCCCACTATAAATTAGCTTTACGCTTTGTTTTGTGAGACTGGACTAATGAGGTACATTAAACATTAGCCTGAagtcagactttaaaaatactgtctgggctaaatataaaaacagatttccaAAAGTACTATTAACAAGCAAAGCCatcataatgataatgaaatCTTAAGTACAGACTGTTCATTTAATAAAAGATCATTCTTAAAATAAGTCCTTCAAttctatttattgtattaatataatctCCTTAGCTGCAAgtgcttgtattttatttatttcaaatcgGCCTCTCTTTTCAGAAAGCCCCTTTAACTAATAATTGTACACTTTACACAGTGTTCCAGCAACCTGATAACTAGCTGTAGCAACTGTTGTCACAAGTTGTAATTACTTTGAAGTTCCCAATGGTATGTAGCATTTAACACATATCCTCAATGTTAATGAATGTGAGAGCAGGAGACACCACTATTAGtaattgcttttattcataGTCTTCATTTTCCAGATAGATCACATTAAACACAGCCATTAGACAATAGCGGTTGAGATAATCCATACAATGTatgtctcttttcttttcaccaGTTGCCTGGTGTAGCTTAGAGCCCTATGGGGTGACAGGGGCTGATAAATGTTGAACACCAGCCCATGGACCAATAGGGGCTGGAAGAGTCAGGACCTCAATCAGGTTTCATTCAATTACACTCCAAATCAACAAACTTTGATAGCCGAAATTCCCTTCTGACTAATGTACCAATTAATCTTGCCTGATGCCAAAAGAATGTAATTAGACAATAATGAGTGGGTGTATATTATGTTAGATTTCAAACTACTTGTTGACCTCAACAACTTATACTCCATTAGACAACAAACAGCTTGAAAATCAGCTATAATAAAGTATGACACATAACCTCCTTTTTTTAGGACTAAATCTGAATGCAGGACATCAGCTGACCCTTAAGGTAATGGTAAGTTAATTTCAGGAATAGAGTGCTAACCGTTTGATCAAAGTGACAatggtttattaaaatgattgcaAAAAGTCTGTGAATAGGATTACTTGCCCATGATACTGAACACTCCGTCTTgacatacacagacaaacataaaaacaatgaaagtgaGATCAATTgtttgaaaaacatgaaataaacaataacagtgtgtgtgttttctgagtGCTATGGCTAGGCAACACGTTTGTTCCCTGAAGTTTGTATTagctaaaattaaataatttggctctggctaaatatatatatatatatataaatctgccAGATATAAATCATCTTTTGCAGTGACGACATCGGAATCATACGCTACActgaatgttgtttttgttgttgttgaaccTTTCCTGGTAACATGTAGAGCATGTCACACCTGTCAAACCTGTcaggctttttaaaatcttacttacaaaaaaaataaaaagtatcctttttccaaaatgtatctCTGGCAGTACACTTGCTTCACTAGGGTGTTGAATGTTCCTTTTTGAGTTTTacctgaataaaaaaatattaaaaaattacaaaatcctgCTGTAGAAGCAGAGTGAAAAGCAAGATATGTATTCTCTTCAAACAAtctttttaatggaaacaatGTCTTGTCTTGCTTTTACCTCAGGTTCctgcttatttaaataaattaataataaacagtttCTTAAGAATGGCCGCTTATGGTACGTAATATAGTTCTGTGGTTTCAGGATCTCTACAGGATATTGAACTATTTTTCAGGTAAGGCCAATCTCTTTCTGCCCTAAAGGCTTAACTGCCAACATACATTCTGCATATATGCTGCCAGATATAATTCAAACTTAATTTGTAGACCAAAAAAgccaatatatttacatatattaatgtCTCTTCATTGCAGTGCTGCTCTGTATTAAAGTCTGCTGTACTGCTTTACTTCCGGtttaatcagattatttttcattatttgtgtaGTGGCATTTACTGTACTGGAATCTGTACAATCGTATGAGCtgaatgtgctttgtttttaataaaagccTTATTTCACAATGAGAAAACCTGAACATAGATATTAAACTCTGCTTCTAGTGCTACAACTGCctgaattaagaaaataaaaaaataaggaaaatggaATTTCAGTTATCAAGTTCGGTAATTTTTTGAGATTTCTGGTAAAATAACAATGTGACACATACAGAAAACATCTTGACAATACATAAACTGCTCAAGAGTAACTTTTTCTTTTGgtccttaattaaataatgatactGCTCATTCTTCTATAGACAATGGGATATCCTCAACAGTCAAGAGCAATCGAGTTGTAATAAGAGAATCTCAGAGCACTTTTTATGTTAGTAAGGCAGTAGTCTATTCAGTAATGAAACAATTCTGCTATAAAAATgccaggttttctttttttttaagttactttttttttagctgCCTCGGTTTGATACATTAGTTTAGTAAAAGTACTCTAGTCATATATGGTTGTTGCTTTTCATTAGCTGGCTCATAAAGCTTTGAACAGTTTATGTATTCTAGTACAGTTTGACCAAACGTTAAACAAGAGACTTTGCTCTGAGGCATTGCTACCCACTCCTGAGGGAAAAgggagcagaaaaaaaatgaaattaaactcaTAGAGTTCGACAGCTACTAAGGCAACAGTTGCCAAATACAATATAAGCCCAAGTATATTGCAACACaactatatattaatttaataaaatacacaatatagcTCTTATACACTTAACAATTTGGCTCATATGCACAGAAAttgcaataaatcaataaaaatatgtaattttgatgtaaacacattaaattcaatacatttgcacattaaATGATCTTGTGTATAGTGATAATGTGAAGGGACATTTCCTTTTGAGAGCCTTTGCAGTGTCCTCtgcagtttataaataaatatttcacaattaactGCAGTTTagcattttttaacactttttttgttttgatttttttcttttttacaaaatgtataaatatttttgttaatatcTGGACACTATAcataagtttatatatatatatatatcttttcaCAGTAGAAGAAAAATGTCCCTAATATACAGGATTATGAGTGGCATTGGGAAGGTTAGACAAGTGGACATAACTGTACATGAAGAGATCAGGAAGTTTATGACGGATGAAGTGTTTACACAATGATCAGGGTGTGTTTTACTGCTTCACCAATTTGGAATGTTCTATGTGGCAGATAAATATAAGGgaacacagtttacacaagtgatTGCTGATGGGATGTGAagatctgtattattttatcaccaccccccacccctaccCTTTCCCCGTTAAAAAGATCTTCTTTTGAACAACAATACCATGAAATCCACAATGCTTGGCTtgtcctcctcctcactcagaCCAAGTTGCTCCGGAATCCGCAAACCAAAGCTCTGGTTTCTAACCGATTGTCATAACATTCTGATACCCATCCATTCATTGTGGATGTCTCCTGCCCGCCCTCACCCTCCCCGGCTGTGAATTGGTGTTCCTTGTGAAGGACAAACTGTAGTGAAAAAGTTATGAGTTGGTGGGCACTTGAAATGCTTACTAGAAGCCAGACGCTGCATCTTCAGCCATCTCCGGGAATCCTAAAGTCTCGGGTCATGTCCTTTCAAAGTTACCCCTCCTTCCTCAGAAGATGCATTGCAATTGTCAGTGTCTTTATTTCGATTatattctttgtttcttttgaaatggtttttttttttcactttcttattGATGTGGCTTCACTCCCTCGACAGTCCTGTAAAAGCTTATCGATTTCACGCACTACTTGTTCAGCATCCATACCCTCCCGGCTTAATTCTGGGTTGGACTGGTCCAACTGCTCCAGAACACAGTCCATCTCGTTCGAGTCTCGACTCACTCGTGAATGCACATCAGCAAGAACTTTAGCCATGGGATCGGACATAAGGTATTGGGAGTCTTTCAGTTGTTTATTAGGCGACAGGTACTGACTACTCGTTTCTGCAAAGTTGCCAGGTTTACCTTCACAGCCGTCTATAAGTCCTTTTGTGGATGTGCATGCAGGGATACACATTTTGCTTGGGCTGTTTGAAGCCGAGGGCACCTCTTGCAATAATGGGCTCAGAGCGCGCTTGGCTTTCAAATAAGGTTTGACATTGGCAACGAGGATTGTGTgatctcttttctcttttccaaaAGTGCAGAAAGTCTTTTTTCCATTGGGGTTCACGGTTTCATAGGTTTCGGTCTCCACTGTTGCTTCCATTCCTGCTGGTACAAAAAGGTTTGTGCGATAATCTGCGCTTTCTGCCTGGTTAGCTGTAGGGAACTGAGGCATCCAACACCTGTCAGAATGTCCTAGTACTCGACACTCATCCGTGCAATTAACGCACTCTTCTtgttc

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89243 lncRNA downstream 192794 19792799 ~ 19880231 (-) True G71360
TU89190 lncRNA downstream 817091 19252574 ~ 19255934 (-) True G71315
TU89167 lncRNA downstream 854897 19217904 ~ 19218128 (-) False AMCG00014603
TU89166 lncRNA downstream 855988 19216213 ~ 19217037 (-) True G71292
TU89165 lncRNA downstream 857779 19214614 ~ 19215246 (-) True G71291
TU89264 lncRNA upstream 108620 20186629 ~ 20186968 (-) True G71379
TU89345 lncRNA upstream 1919913 21997922 ~ 21998188 (-) True G71451
TU89356 lncRNA upstream 2143061 22221070 ~ 22221467 (-) True G71461
TU89373 lncRNA upstream 2147915 22225924 ~ 22228714 (-) False AMCG00014630
TU89398 lncRNA upstream 2228625 22306634 ~ 22306947 (-) True G71496
AMCG00014616 mRNA downstream 682173 19386615 ~ 19390852 (-) True AMCG00014616
AMCG00014614 mRNA downstream 727355 19342131 ~ 19345670 (-) True AMCG00014614
AMCG00014615 mRNA downstream 734365 19330888 ~ 19338660 (-) True AMCG00014615
AMCG00014603 mRNA downstream 847795 19217722 ~ 19225230 (-) True AMCG00014603
AMCG00014604 mRNA downstream 869458 19202812 ~ 19203567 (-) False AMCG00014604
AMCG00014623 mRNA upstream 281137 20359146 ~ 20401033 (-) True AMCG00014623
AMCG00014621 mRNA upstream 374175 20452184 ~ 20458681 (-) True AMCG00014621
AMCG00014620 mRNA upstream 398340 20476349 ~ 20479063 (-) True AMCG00014620
AMCG00014622 mRNA upstream 623815 20701824 ~ 20708613 (-) True AMCG00014622
AMCG00014625 mRNA upstream 1218005 21296014 ~ 21312988 (-) True AMCG00014625
TU87063 other downstream 8410532 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 9274878 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 10755858 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 11688801 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 11914435 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 8251730 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 9311281 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 12185158 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 12519453 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 12519453 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008074 True 5398 mRNA 0.46 5 NC_007122.7 32576300 ~ 32723851 (-)
striped catfish (Pangasianodon hypophthalmus) TU220198 True 2520 lncRNA 0.40 1 NC_047605.1 22378283 ~ 22380802 (-)
mexican tetra (Astyanax mexicanus) TU54955 True 345 lncRNA 0.28 1 NC_035901.1 7013868 ~ 7014212 (-)