RNA id: TU89356


Basic Information

Item Value
RNA id TU89356
length 398
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G71461
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22221070 ~ 22221467 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgctccccacatgcatcaatgagccttggccacccatgaccctgtcgccggttcaccgattttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacatcatctttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89345 lncRNA downstream 222882 21997922 ~ 21998188 (-) True G71451
TU89264 lncRNA downstream 2034102 20186629 ~ 20186968 (-) True G71379
TU89256 lncRNA downstream 2143061 20073025 ~ 20078009 (-) True G71371
TU89243 lncRNA downstream 2340839 19792799 ~ 19880231 (-) True G71360
TU89190 lncRNA downstream 2965136 19252574 ~ 19255934 (-) True G71315
TU89373 lncRNA upstream 4457 22225924 ~ 22228714 (-) False AMCG00014630
TU89398 lncRNA upstream 85167 22306634 ~ 22306947 (-) True G71496
TU89417 lncRNA upstream 335916 22557383 ~ 22557663 (-) True G71512
TU89431 lncRNA upstream 633882 22855349 ~ 22855619 (-) True G71526
TU89444 lncRNA upstream 740402 22961869 ~ 22962070 (-) True G71539
AMCG00014628 mRNA downstream 95704 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014629 mRNA downstream 107439 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014627 mRNA downstream 441569 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014626 mRNA downstream 593180 21620825 ~ 21627890 (-) True AMCG00014626
AMCG00014625 mRNA downstream 908082 21296014 ~ 21312988 (-) True AMCG00014625
AMCG00014630 mRNA upstream 4458 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014631 mRNA upstream 98561 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014633 mRNA upstream 1382142 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014634 mRNA upstream 1543611 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014639 mRNA upstream 2678624 24900091 ~ 24910282 (-) True AMCG00014639
TU87063 other downstream 10558577 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 11422923 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 12903903 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 13836846 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 14062480 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 6108272 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 7167823 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 10041700 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 10375995 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 10375995 32597462 ~ 32619149 (-) False G73127

Expression Profile