RNA id: TU89345


Basic Information

Item Value
RNA id TU89345
length 267
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G71451
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 21997922 ~ 21998188 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcgcaaggatctgagtgactttgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89264 lncRNA downstream 1810954 20186629 ~ 20186968 (-) True G71379
TU89256 lncRNA downstream 1919913 20073025 ~ 20078009 (-) True G71371
TU89243 lncRNA downstream 2117691 19792799 ~ 19880231 (-) True G71360
TU89190 lncRNA downstream 2741988 19252574 ~ 19255934 (-) True G71315
TU89167 lncRNA downstream 2779794 19217904 ~ 19218128 (-) False AMCG00014603
TU89356 lncRNA upstream 222882 22221070 ~ 22221467 (-) True G71461
TU89373 lncRNA upstream 227736 22225924 ~ 22228714 (-) False AMCG00014630
TU89398 lncRNA upstream 308446 22306634 ~ 22306947 (-) True G71496
TU89417 lncRNA upstream 559195 22557383 ~ 22557663 (-) True G71512
TU89431 lncRNA upstream 857161 22855349 ~ 22855619 (-) True G71526
AMCG00014627 mRNA downstream 218421 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014626 mRNA downstream 370032 21620825 ~ 21627890 (-) True AMCG00014626
AMCG00014625 mRNA downstream 684934 21296014 ~ 21312988 (-) True AMCG00014625
AMCG00014622 mRNA downstream 1289309 20701824 ~ 20708613 (-) True AMCG00014622
AMCG00014620 mRNA downstream 1518859 20476349 ~ 20479063 (-) True AMCG00014620
AMCG00014629 mRNA upstream 113994 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014628 mRNA upstream 121552 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014630 mRNA upstream 227737 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014631 mRNA upstream 321840 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014633 mRNA upstream 1605421 23603609 ~ 23604731 (-) True AMCG00014633
TU87063 other downstream 10335429 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 11199775 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 12680755 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 13613698 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 13839332 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 6331551 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 7391102 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 10264979 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 10599274 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 10599274 32597462 ~ 32619149 (-) False G73127

Expression Profile