RNA id: TU89417


Basic Information

Item Value
RNA id TU89417
length 281
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G71512
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22557383 ~ 22557663 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccatgaccctgttgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacagtttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacatcaactttgaggacaagatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgt

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89398 lncRNA downstream 250436 22306634 ~ 22306947 (-) True G71496
TU89373 lncRNA downstream 328669 22225924 ~ 22228714 (-) False AMCG00014630
TU89356 lncRNA downstream 335916 22221070 ~ 22221467 (-) True G71461
TU89345 lncRNA downstream 559195 21997922 ~ 21998188 (-) True G71451
TU89264 lncRNA downstream 2370415 20186629 ~ 20186968 (-) True G71379
TU89431 lncRNA upstream 297686 22855349 ~ 22855619 (-) True G71526
TU89444 lncRNA upstream 404206 22961869 ~ 22962070 (-) True G71539
TU89445 lncRNA upstream 426486 22984149 ~ 22984567 (-) True G71540
TU89467 lncRNA upstream 854953 23412616 ~ 23412984 (-) True G71561
TU89491 lncRNA upstream 1147536 23705199 ~ 23705420 (-) True G71582
AMCG00014631 mRNA downstream 224573 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014630 mRNA downstream 312468 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014628 mRNA downstream 432017 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014629 mRNA downstream 443752 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014627 mRNA downstream 777882 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014633 mRNA upstream 1045946 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014634 mRNA upstream 1207415 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014639 mRNA upstream 2342428 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014640 mRNA upstream 2356640 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014641 mRNA upstream 2403283 24960946 ~ 24961689 (-) True AMCG00014641
TU87063 other downstream 10894890 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 11759236 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 13240216 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 14173159 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 14398793 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 5772076 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 6831627 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 9705504 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 10039799 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 10039799 32597462 ~ 32619149 (-) False G73127

Expression Profile