RNA id: XM_043235748.1


Basic Information

Item Value
RNA id XM_043235748.1
length 1380
RNA type mRNA
GC content 0.45
exon number 2
gene id ggact.3
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1043185 ~ 1045789 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGTTCGGAACGTTTAAGGTTGAAGTCCATTGAGAGCGTTTTAGCAGGTCCTTCCCATTCTCTCCCAAAATCACAGTTCTGCCTTTGTTAAATGAAAGGGCTTCCATAGAAAGGATCCATAATACTGTCGATTATTCTGTCCCGTGGTTCACATGGCTCGCGTTTTCGTCTACGGCACGCTGAAGAAAGGCCAGCCCAACTACTTCAGGATGATGGATCCTGCCAACGGTCGGGCTGAGTTCCTCGCTCGCGCTCGAACCGTAGAGCCGTACCCCCTCGTGATCGCCACCGAACACAGCATCCCCTTCCTGCTCGACGCTCCCGGGACGGGCCGGCGCGTCTGCGGAGAGATCTACCGCGTGGACCAGAAGATGCTGGAGTTCCTGGACCGCTTCGAGCGCTGCCCTCACTGGTACCAGCGCGCCGAGGTCCGGTTAGAGGTGGAGGACGGAGACGGAGAGGGAGAAAACGCGCTGAGGCCCGGAAGCATCGAGGAGGCGTTCGTGTACAGGAAGACTACGCATGAACCCGAGTGGCTCCAGAAACCCACATATGAGAGTTATGATGCATATGGAGATCACGGACTGAAATATGTGCGTCCTGAAGACAGAAGCCCTGAGTAGTGACTACACCAAGAGTCAAGCCTAAAAGGAACCGTAGCATAGCATCGGAAAACAGGATCCAAAATCAACACTTGCTGATCAATTAAtcacagaaagaaaaatcatCAGACGCTGGAGTCATGTCGTAGCATGTAAgtgtcaaatgttttttaaaatgtgtttattttaattgttaattgtcattgtgttcttctgctttatactgtacagtgctttgatgcgaCCTgcgttgttaaaagcgctatagaaataaaaatgattgattgatttgatcattttgacgGGTGCTTTGGTTTATTTGGCTCAACTCAGCACAAAGTATGAATAAGAGAGGAGGCGATTAGGAAACACGCCAGTTTTTGATTGGTTTCCCAAAACCAGTCTCAACAAACTTAAAGATTGTGATTTTATAGACTTGAGGTGATATTGGGTTTACATTTACACTCCAGTGTCTGATGGCTTGTAGACTTTATTTGTGATTCATTTACTGGCAGTTAGCTGAAATGTCGCATCGGATGGAACGACGCGAAAGAGTTAGCAATAAAAGGTGCTTGGGGCAATATAGTAGTAGTAgggataatataatattacaatattatgtGCAATAGCAAAACACTCCAGTGCAGGATATGGAGAAATCAGGTGTTTACTTTGTATGTGCCGTACTTCCATGTTTGCTGTATCTGTATATATGCTGTAGAAGTGTTTTAAGAGTTTTCTAAATtgcaatttgaaataaaataattcattcaaaa

Function

GO:

id name namespace
GO:0042219 cellular modified amino acid catabolic process biological_process
GO:0003839 gamma-glutamylcyclotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182 lncRNA upstream 132488 910489 ~ 910697 (+) True G128
TU170 lncRNA upstream 153129 888664 ~ 890056 (+) True G121
TU169 lncRNA upstream 154822 885518 ~ 888363 (+) True G120
TU122 lncRNA upstream 420447 616164 ~ 622738 (+) True G84
XR_006251346.1 lncRNA upstream 568025 474039 ~ 475160 (+) True LOC122348571
TU201 lncRNA downstream 4973 1050762 ~ 1083379 (+) True G141
TU226 lncRNA downstream 80677 1126466 ~ 1128090 (+) True G162
TU194 lncRNA downstream 80977 1126766 ~ 1170672 (+) True G138
TU196 lncRNA downstream 102597 1148386 ~ 1151169 (+) True G139
TU193 lncRNA downstream 120719 1166508 ~ 1212143 (+) False G138
XM_043235832.1 mRNA upstream 304263 729071 ~ 738922 (+) True LOC122342042
XM_043233795.1 mRNA upstream 450844 567855 ~ 592341 (+) True LOC122337612
XM_043235769.1 mRNA upstream 593545 445940 ~ 449640 (+) True LOC122341994
XM_043242803.1 mRNA downstream 199374 1245163 ~ 1250334 (+) True LOC122347479
XM_043242814.1 mRNA downstream 200890 1246679 ~ 1250334 (+) False LOC122347479
XM_043242780.1 mRNA downstream 200904 1246693 ~ 1261857 (+) True LOC122347468
XM_043242789.1 mRNA downstream 214388 1260177 ~ 1261968 (+) False LOC122347468
XM_043248864.1 mRNA downstream 282596 1328385 ~ 1331549 (+) True LOC122351641
TU24 other upstream 864985 177716 ~ 178200 (+) True G10
TU190 other downstream 73930 1119719 ~ 1120721 (+) True G136
TU309 other downstream 393284 1439073 ~ 1441439 (+) False LOC122327253
TU310 other downstream 393284 1439073 ~ 1441439 (+) False LOC122327253
TU311 other downstream 393284 1439073 ~ 1441666 (+) True LOC122327253
TU616 other downstream 1140070 2185859 ~ 2192464 (+) True cyyr1

Expression Profile