RNA id: TU193


Basic Information

Item Value
RNA id TU193
length 1072
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G138
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1126766 ~ 1212143 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttcctttctttattcattttgtctCAATAGATTTTACACTATTTTTCTGGAACCAAAAACATTTGACTATATGACATAAAATagcacataatatatatgcacaaataaaacatttaaaatggttaCATGAAAACTAATATTATCCAAAGAGGGCTTggtttataattttcttttcgTATTATctctgtggatgtgtgtgtgtgtgtgtgtgtgtgtggatgggcATACTGCATTACAGATGGTAGTCAAGCAGCACAGCGTAAATACCCACAATCCCTTGAGAGCGGCATCTCATCGCAAACAGGAAAGGGCATTGAAAAGCATCAACACCGTCAAACCTTTGGGCCTCTCAGTGACAATGcttggaaataataataataatcataaaaaactCTTACATTAGTTATAGGTATAGTATATATTGGTATATAAATGGAGGTGAGAAGTAAGTTCAGTAGACCTGTTGACACCCTAGTACATATTAATAGCTCTGAAACACAAAAGCTTAAACAATGGACTAAAGGTAAGGCAAAGTGTTTGGATACGCTGTGTCTGCTCAGTATATCAACTGATTCCAAAGTGCTTTTTCACCATCAGTCAACAATTGTTTTGTCCCGAAACTCTGTACATTTCTTTCGGGGCGTAAGAAATCCCAAATTAAGGACAACCGTTACCTTCATCACAtgtgcaggtttttttttcttttatagtgTAGATAGAAACATTcaatatatttccttttttttttttttttttttcttttttattattattattttctcagGTTAAATTGAAAATAACTTCTTAAATTTGACATAAAATACCATGCAAGATGCTTACAGAATATTTAGTTCTCTGGTTTAactaaagcaataaaacaaccGTCGTTGATCCGTGTTGCCATACCATATTCATTGTGCATCGGTTTTCTGAAATGAACATCCTACGGTTACAAGAAATCAAAGTGCAATCGTTAATTCGTTTAAGTTGTTGAACAAACCAGGACAGCTTTCataaataatatgtgtgtgtgtgtctgtgtatatatatatatatatatatatatatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196 lncRNA upstream 15339 1148386 ~ 1151169 (+) True G139
TU226 lncRNA upstream 38418 1126466 ~ 1128090 (+) True G162
TU201 lncRNA upstream 83129 1050762 ~ 1083379 (+) True G141
TU182 lncRNA upstream 255811 910489 ~ 910697 (+) True G128
TU170 lncRNA upstream 276452 888664 ~ 890056 (+) True G121
TU245 lncRNA downstream 5922 1218065 ~ 1218734 (+) True G175
TU296 lncRNA downstream 117452 1329595 ~ 1336345 (+) True G207
XR_006251676.1 lncRNA downstream 145691 1357834 ~ 1402615 (+) True LOC122350990
TU306 lncRNA downstream 171610 1383753 ~ 1384030 (+) True G217
TU288 lncRNA downstream 184756 1396899 ~ 1398974 (+) True G203
XM_043235725.1 mRNA upstream 118697 1043183 ~ 1047811 (+) False LOC122341978
XM_043235735.1 mRNA upstream 118697 1045027 ~ 1047811 (+) True LOC122341978
XM_043235748.1 mRNA upstream 120719 1043185 ~ 1045789 (+) False ggact.3
XM_043235756.1 mRNA upstream 120719 1043330 ~ 1045789 (+) True ggact.3
XM_043235832.1 mRNA upstream 427586 729071 ~ 738922 (+) True LOC122342042
XM_043242803.1 mRNA downstream 33020 1245163 ~ 1250334 (+) True LOC122347479
XM_043242814.1 mRNA downstream 34536 1246679 ~ 1250334 (+) False LOC122347479
XM_043242780.1 mRNA downstream 34550 1246693 ~ 1261857 (+) True LOC122347468
XM_043242789.1 mRNA downstream 48034 1260177 ~ 1261968 (+) False LOC122347468
XM_043248864.1 mRNA downstream 116242 1328385 ~ 1331549 (+) True LOC122351641
TU190 other upstream 45787 1119719 ~ 1120721 (+) True G136
TU24 other upstream 988308 177716 ~ 178200 (+) True G10
TU309 other downstream 226930 1439073 ~ 1441439 (+) False LOC122327253
TU310 other downstream 226930 1439073 ~ 1441439 (+) False LOC122327253
TU311 other downstream 226930 1439073 ~ 1441666 (+) True LOC122327253
TU616 other downstream 973716 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 1271530 2483673 ~ 2485988 (+) False grtp1a

Expression Profile