Fish Single-cell RNA Database

CELL TYPE: RPE

Distribution of RPE in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000045758	cracr2ab	4: 11135048 ~ 11148941 (+)
ENSDARG00000059053	slc13a4	4: 4803698 ~ 4832149 (+)
ENSDARG00000020143	pah	4: 17391680 ~ 17409533 (-)
ENSDARG00000099313	naga	4: 982028 ~ 992148 (-)
ENSDARG00000098745	tfec	4: 6032640 ~ 6047236 (+)
ENSDARG00000036074	cebpa	7: 38084986 ~ 38087865 (-)
ENSDARG00000001975	hsd11b2	7: 35112052 ~ 35126374 (-)
ENSDARG00000036427	slc3a2a	7: 20524064 ~ 20530447 (+)
ENSDARG00000102051	mtbl	7: 29148714 ~ 29149228 (+)
ENSDARG00000069461	rnaseka	7: 26048033 ~ 26049328 (-)
ENSDARG00000015349	mfge8a	7: 48788147 ~ 48805181 (-)
ENSDARG00000012504	rlbp1a	7: 13867722 ~ 13884610 (-)
ENSDARG00000029204	tyrp1a	7: 74084203 ~ 74090168 (-)
ENSDARG00000063288	slc2a11b	5: 10014604 ~ 10046183 (+)
ENSDARG00000077653	rabl6b	5: 26805608 ~ 26828380 (+)
ENSDARG00000007836	ctsla	5: 44804791 ~ 44810920 (+)
ENSDARG00000059743	tmem98	3: 39099716 ~ 39110228 (+)
ENSDARG00000037870	actb2	3: 40526107 ~ 40529804 (-)
ENSDARG00000094695	si:dkey-204f11.64	3: 34140507 ~ 34147100 (+)
ENSDARG00000015575	cyp3c1	3: 40969242 ~ 40976582 (-)
ENSDARG00000098224	tlcd4b	3: 14388010 ~ 14452325 (+)
ENSDARG00000028048	rdh8a	3: 53687645 ~ 53722182 (-)
ENSDARG00000100376	amdhd2	3: 13523773 ~ 13546610 (-)
ENSDARG00000013144	atp1b1a	6: 29217392 ~ 29227487 (+)
ENSDARG00000003732	mitfa	6: 43390387 ~ 43433277 (+)
ENSDARG00000016963	slc16a1a	6: 48978202 ~ 49049019 (+)
ENSDARG00000005191	ahcy	6: 49926115 ~ 49966288 (+)
ENSDARG00000061303	oca2	6: 37894220 ~ 38054851 (+)
ENSDARG00000018077	rbp1.1	2: 39028337 ~ 39036604 (-)
ENSDARG00000102291	eef1da	2: 50999477 ~ 51032888 (+)
ENSDARG00000038867	shhb	2: 30050541 ~ 30055432 (-)
ENSDARG00000007480	rpe65a	2: 1428696 ~ 1443692 (-)
ENSDARG00000002791	atp1a1a.1	1: 1712140 ~ 1793371 (+)
ENSDARG00000056151	tyrp1b	1: 19332837 ~ 19346048 (+)
ENSDARG00000061985	rbm47	1: 19353048 ~ 19402815 (-)
ENSDARG00000079280	dhrsx	1: 33383644 ~ 33487375 (+)
ENSDARG00000037350	rpl9	1: 23269503 ~ 23274504 (-)
ENSDARG00000058996	jam2a	1: 594584 ~ 608247 (+)
ENSDARG00000074812	fhdc1	1: 25399514 ~ 25438934 (-)
ENSDARG00000077652	lratb.2	1: 10118455 ~ 10124192 (+)
ENSDARG00000031952	mb	1: 55137943 ~ 55145085 (+)
ENSDARG00000053269	slc2a15b	1: 31573225 ~ 31598417 (+)
ENSDARG00000037278	lrata	1: 25696798 ~ 25698039 (+)
ENSDARG00000102506	lrp2a	9: 48415043 ~ 48672254 (+)
ENSDARG00000036558	col18a1a	9: 41821613 ~ 41979505 (+)
ENSDARG00000034718	tfpia	9: 42420636 ~ 42484448 (-)
ENSDARG00000006008	dct	9: 53327332 ~ 53352682 (+)
ENSDARG00000026369	dbi	9: 907459 ~ 914886 (+)
ENSDARG00000034572	gpr143	9: 55056310 ~ 55090829 (+)
ENSDARG00000029955	glb1l	9: 12847040 ~ 12869049 (+)
ENSDARG00000040039	pttg1ipb	9: 12655278 ~ 12659140 (-)
ENSDARG00000040280	NA	16: 25231963 ~ 25233515 (-)
ENSDARG00000002311	fabp11b	16: 16148761 ~ 16152199 (-)
ENSDARG00000097057	fxyd6l	16: 24601140 ~ 24642815 (-)
ENSDARG00000101481	rbp5	16: 31706841 ~ 31718013 (-)
ENSDARG00000010785	thbs1b	20: 29036328 ~ 29052391 (-)
ENSDARG00000042934	ccn2a	20: 25340814 ~ 25343490 (+)
ENSDARG00000042133	si:dkey-51e6.1	20: 33981946 ~ 33985743 (+)
ENSDARG00000043322	gsx2	20: 22483048 ~ 22484621 (-)
ENSDARG00000029036	rab32a	20: 32009271 ~ 32045182 (-)
ENSDARG00000041799	cx43	20: 40715163 ~ 40720530 (-)
ENSDARG00000102612	slc15a4	8: 35809081 ~ 35960987 (-)
ENSDARG00000043701	gpd1a	8: 7033049 ~ 7052493 (+)
ENSDARG00000024540	tspan36	8: 29726620 ~ 29734951 (+)
ENSDARG00000007275	si:ch211-251b21.1	8: 47633438 ~ 47665026 (+)
ENSDARG00000042112	dio1	8: 18039570 ~ 18042089 (-)
ENSDARG00000034222	hs1bp3	17: 48947762 ~ 48961698 (+)
ENSDARG00000091813	si:dkey-21a6.5	17: 43519290 ~ 43533095 (-)
ENSDARG00000006840	gnmt	17: 48920799 ~ 48936123 (-)
ENSDARG00000028740	msnb	14: 9287683 ~ 9336601 (+)
ENSDARG00000101794	atp6v0e1	14: 52565660 ~ 52576034 (+)
ENSDARG00000080010	adh5	14: 43590816 ~ 43602968 (-)
ENSDARG00000040190	qdpra	14: 46873229 ~ 46897067 (-)
ENSDARG00000053684	aldob	14: 21106444 ~ 21121199 (+)
ENSDARG00000037307	gnpda1	14: 23709134 ~ 23715349 (+)
ENSDARG00000019353	sparc	14: 25937948 ~ 25956860 (-)
ENSDARG00000090228	gsta.1	13: 844143 ~ 852506 (+)
ENSDARG00000069192	zgc:163030	13: 33669936 ~ 33671694 (-)
ENSDARG00000007795	cst3	13: 33675556 ~ 33683913 (-)
ENSDARG00000069265	matn3b	13: 32627444 ~ 32635885 (-)
ENSDARG00000013968	psap	13: 5004924 ~ 5028964 (+)
ENSDARG00000039605	mat1a	13: 18628920 ~ 18637244 (-)
ENSDARG00000031483	col9a1b	13: 39119460 ~ 39160018 (-)
ENSDARG00000031981	pcbd1	13: 25720969 ~ 25726534 (+)
ENSDARG00000054890	rgra	13: 29446226 ~ 29455859 (-)
ENSDARG00000042214	tmem243a	18: 8912113 ~ 8916000 (+)
ENSDARG00000057698	ctsd	18: 16133595 ~ 16146081 (+)
ENSDARG00000059163	rbp3	12: 2665081 ~ 2670156 (+)
ENSDARG00000099101	gch2	12: 25085751 ~ 25092570 (+)
ENSDARG00000098724	rgrb	12: 48965049 ~ 48970299 (-)
ENSDARG00000087059	selenou1b	12: 47778786 ~ 47782623 (-)
ENSDARG00000077664	zgc:110239	19: 42490936 ~ 42503143 (-)
ENSDARG00000016623	si:ch211-195b13.1	19: 24872159 ~ 24889227 (+)
ENSDARG00000035694	stm	19: 3137518 ~ 3167878 (-)
ENSDARG00000020850	eef1a1l1	19: 43119014 ~ 43137740 (+)
ENSDARG00000087611	FP085398.1	19: 26828502 ~ 26844582 (+)
ENSDARG00000075436	sytl2b	15: 19697246 ~ 19724932 (-)
ENSDARG00000044781	bace2	15: 6459847 ~ 6493615 (+)
ENSDARG00000039490	pitpnaa	15: 28410664 ~ 28425011 (+)
ENSDARG00000004141	NA	15: 15415623 ~ 15437530 (+)
ENSDARG00000069823	proca1	15: 15445113 ~ 15449929 (-)
ENSDARG00000099563	inpp5ka	15: 33843596 ~ 33865029 (+)
ENSDARG00000076602	prss16	15: 43286785 ~ 43327911 (-)
ENSDARG00000039077	tyr	15: 43799258 ~ 43818697 (+)
ENSDARG00000025147	cd63	23: 32066168 ~ 32085939 (+)
ENSDARG00000033760	pmelb	23: 35672542 ~ 35690336 (+)
ENSDARG00000092807	si:dkey-151g10.6	23: 25305431 ~ 25306603 (+)
ENSDARG00000002593	slc45a2	21: 19445942 ~ 19484289 (+)
ENSDARG00000117130	BX936439.1	21: 36581384 ~ 36601799 (+)
ENSDARG00000057575	pnp4a	11: 24251141 ~ 24299538 (+)
ENSDARG00000077082	agtrap	11: 16040517 ~ 16064291 (+)
ENSDARG00000097827	lrp1aa	11: 1628538 ~ 1864288 (+)
ENSDARG00000055053	itih1	11: 3630627 ~ 3647014 (-)
ENSDARG00000004060	bhlhe40	11: 35759652 ~ 35763323 (-)
ENSDARG00000089507	ugt1b5	11: 30303785 ~ 30330015 (+)
ENSDARG00000091298	pmela	11: 3254252 ~ 3272020 (+)
ENSDARG00000078618	inpp5kb	10: 24302433 ~ 24319526 (-)
ENSDARG00000053381	plpp1a	10: 8265972 ~ 8295342 (-)
ENSDARG00000004296	ambp	10: 10801564 ~ 10824286 (+)
ENSDARG00000043901	ugt5g2	10: 22082596 ~ 22086626 (-)
ENSDARG00000044295	pip5k1ba	10: 15881309 ~ 15919839 (-)
ENSDARG00000098245	cidea	24: 2949937 ~ 2959182 (-)
ENSDARG00000060668	tm4sf18	22: 38159823 ~ 38168571 (+)
ENSDARG00000008306	rdh5	22: 10110358 ~ 10121880 (-)
ENSDARG00000029057	tm6sf2	22: 17784414 ~ 17823608 (+)
ENSDARG00000046030	zgc:110339	25: 10547228 ~ 10553685 (+)
ENSDARG00000051874	stra6	25: 22571475 ~ 22634675 (+)
ENSDARG00000045808	rlbp1b	25: 19105804 ~ 19118127 (+)
ENSDARG00000062059	si:ch211-236l14.4	25: 23656879 ~ 23745765 (-)
ENSDARG00000103476	trpm1b	25: 34576067 ~ 34615463 (+)
--	fgfbp1b.1	--
--	cabz01044960.1	--
--	cr855387.1	--
--	si:dkey-166f24.2	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of RPE.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE158142 (1.5dpf)	Danio rerio	head	14	RPE	baseline	1.5dpf, untreatment	ENSDARG00000033760 (pmelb)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (1.5dpf)	Danio rerio	head	14	RPE	baseline	1.5dpf, untreatment	ENSDARG00000002593 (slc45a2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (1.5dpf)	Danio rerio	head	14	RPE	baseline	1.5dpf, untreatment	ENSDARG00000029204 (tyrp1a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (1.5dpf)	Danio rerio	head	14	RPE	baseline	1.5dpf, untreatment	ENSDARG00000061303 (oca2)	marker	DOI:10.1016/j.neuron.2020.09.023
PRJNA672101 (nrl-KO)	Danio rerio	retina	10	RPE	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000098724 (rgrb)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	10	RPE	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000008306 (rdh5)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	10	RPE	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000033760 (pmelb)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	10	RPE	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000077652 (lratb.2)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	11	RPE	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000098724 (rgrb)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	11	RPE	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000008306 (rdh5)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	11	RPE	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000033760 (pmelb)	marker	DOI:10.1371/journal.pgen.1009841

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: RPE

Distribution of RPE in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences