DATASET ID: PRJNA608912 (wt_2dpi)

Basic information

Tissue / Organ heart
Experiment type regeneration
Sample 5mpf, wild type, 2 days post injury
Source dataset ID SRR11186440
Project ID PRJNA608912
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Endocardial endothelial cells ENSDARG00000070266 (spock3) protein_coding marker DOI:10.15252/embr.202152901
    1 Endocardial endothelial cells ENSDARG00000045141 (aqp8a.1) protein_coding marker DOI:10.15252/embr.202152901
    2 Macrophages ENSDARG00000044612 (c1qb) protein_coding marker DOI:10.15252/embr.202152901
    2 Macrophages ENSDARG00000009087 (cd74a) protein_coding marker DOI:10.15252/embr.202152901
    3 Fibroblasts ENSDARG00000006526 (fn1b) protein_coding marker DOI:10.1016/j.ydbio.2013.08.012, DOI:10.15252/embr.202152901
    3 Fibroblasts ENSDARG00000012405 (col1a1a) protein_coding marker DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    5 Coronary endothelial cells ENSDARG00000070038 (rbp2a) protein_coding marker DOI:10.15252/embr.202152901
    6 Macrophages ENSDARG00000089362 (grn1) protein_coding marker DOI:10.15252/embr.202152901
    7 Fibroblasts ENSDARG00000006526 (fn1b) protein_coding marker DOI:10.1016/j.ydbio.2013.08.012, DOI:10.15252/embr.202152901
    7 Fibroblasts ENSDARG00000012405 (col1a1a) protein_coding marker DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    8 Mesenchymal cells ENSDARG00000104340 (rspo1) protein_coding marker DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
    9 Macrophages ENSDARG00000044612 (c1qb) protein_coding marker DOI:10.15252/embr.202152901
    10 Neutrophils ENSDARG00000019521 (mpx) protein_coding marker DOI:10.1189/jlb.4MR1114-524R, DOI:10.15252/embr.202152901
    11 Coronary endothelial cells ENSDARG00000002644 (rgs5a) protein_coding marker DOI:10.15252/embr.202152901
    11 Coronary endothelial cells ENSDARG00000055100 (cxcl12b) protein_coding marker DOI:10.15252/embr.202152901
    13 Erythroid cells ENSDARG00000011166 (cahz) protein_coding marker DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901
    13 Erythroid cells ENSDARG00000012881 (slc4a1a) protein_coding marker DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901
    16 Thrombocytes ENSDARG00000074441 (gp1bb) protein_coding marker DOI:10.15252/embr.202152901
    17 Immune cells ENSDARG00000020788 (sla2) protein_coding marker DOI:10.15252/embr.202152901

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)