DATASET ID: PRJNA668529 (3h)

Basic information

Tissue / Organ olfactory rosette
Experiment type disease
Sample 3mpf, intranasal 100ng r-Spike 3 hours
Source dataset ID SRR12858255
Project ID PRJNA668529
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Ciliated olfactory sensory neuron ENSDARG00000032380 (ompb) protein_coding marker DOI:10.1073/pnas.93.18.9858, DOI:10.1016/j.bbi.2022.03.006
    2 Lymphocyte cells ENSDARG00000055186 (ccr9a) protein_coding marker DOI:10.1007/s00251-007-0250-6, DOI:10.1016/j.bbi.2022.03.006
    3 Endothelium ENSDARG00000030125 (sox7) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    4 Basal cells ENSDARG00000058371 (krt5) protein_coding marker DOI:10.1073/pnas.1620664114, DOI:10.1016/j.bbi.2022.03.006
    4 Basal cells ENSDARG00000068288 (lamc2) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    4 Basal cells ENSDARG00000035809 (col1a1b) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    5 Microvillus olfactory sensory neuron ENSDARG00000003344 (trpc2b) protein_coding marker DOI:10.1186/1471-2148-8-48, DOI:10.1016/j.bbi.2022.03.006
    5 Microvillus olfactory sensory neuron ENSDARG00000038729 (s100z) protein_coding marker DOI:10.1186/1471-2148-8-48, DOI:10.1016/j.bbi.2022.03.006
    6 Neuron ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    6 Neuron ENSDARG00000077811 (sox11a) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    6 Neuron ENSDARG00000095743 (sox11b) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    7 Endothelium ENSDARG00000030125 (sox7) protein_coding marker DOI:10.3389/fcvm.2019.00030, DOI:10.1016/j.bbi.2022.03.006
    8 Macrophages ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1182/blood-2010-10-314120, DOI:10.1016/j.bbi.2022.03.006
    10 Macrophages ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1182/blood-2010-10-314120, DOI:10.1016/j.bbi.2022.03.006
    11 Macrophages ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1182/blood-2010-10-314120, DOI:10.1016/j.bbi.2022.03.006
    15 Myeloid cells ENSDARG00000104474 (il6r) protein_coding marker DOI:10.1016/j.bbi.2022.03.006

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)