DATASET ID: GSE158099 (WT)

Basic information

Tissue / Organ whole body
Experiment type baseline
Sample 2.5dpf, cd41:GFPlow-WT
Source dataset ID GSM4792208
Project ID GSE158099
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Multipotent cells ENSDARG00000078781 (si:ch211-161c3.6) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    2 HSPCs ENSDARG00000043126 (blf) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    2 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    2 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    3 Chondrocytes ENSDARG00000073699 (col9a1a) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    4 Epithelial cells ENSDARG00000040534 (epcam) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    5 Multipotent cells ENSDARG00000078781 (si:ch211-161c3.6) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    6 Multipotent cells ENSDARG00000078781 (si:ch211-161c3.6) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    7 Erythroid cells ENSDARG00000113599 (hbbe1.1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    8 HSPCs ENSDARG00000043126 (blf) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    8 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    8 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    9 Neutrophils ENSDARG00000019521 (mpx) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    10 Neuron ENSDARG00000021143 (rtn1b) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    12 Epidermal cells ENSDARG00000032849 (ndrg1a) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    13 Macrophages ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1182/bloodadvances.2020003969

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)