DATASET ID: GSE158099 (runx1 -|-)


Basic information


Tissue / Organ whole body
Experiment type hematopoietic
Sample 16dpf, cd41:GFPlow-runx1-/-
Source dataset ID GSM4792216
Project ID GSE158099
Species Danio rerio

Created with Highcharts 9.3.2blfhdrtal1si:ch211-161c3_6cd9bcdh1mpxnt5c2l1ctss2_2rtn1andrg1a图表导出菜单Word Cloud of Markers

Clustering Result


Created with Highcharts 9.3.2图表导出菜单Cell Number of each Cell TypeHSPCsMultipotent cellsUncharacterizedNeutrophilsEpidermal cellsMacrophagesNeuron0500100015002000250030003500

Function


  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.
  • Marker Relationship


    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 HSPCs ENSDARG00000043126 (blf) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    1 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    1 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    2 HSPCs ENSDARG00000043126 (blf) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    2 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    2 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    3 Multipotent cells ENSDARG00000078781 (si:ch211-161c3.6) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    5 HSPCs ENSDARG00000043126 (blf) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    5 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    5 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    6 Neutrophils ENSDARG00000019521 (mpx) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    7 Multipotent cells ENSDARG00000078781 (si:ch211-161c3.6) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    8 HSPCs ENSDARG00000034852 (nt5c2l1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    9 Epidermal cells ENSDARG00000016691 (cd9b) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    9 Epidermal cells ENSDARG00000102750 (cdh1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    10 Macrophages ENSDARG00000013771 (ctss2.2) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    11 Neuron ENSDARG00000006497 (rtn1a) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    12 Epidermal cells ENSDARG00000016691 (cd9b) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    13 Epidermal cells ENSDARG00000102750 (cdh1) protein_coding marker DOI:10.1182/bloodadvances.2020003969
    14 Epidermal cells ENSDARG00000032849 (ndrg1a) protein_coding marker DOI:10.1182/bloodadvances.2020003969

    Expression



    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)