Fish Single-cell RNA Database

GENE ID: ENSDARG00000070314

Symbol	Location	Gene type	Genome version	Species
cald1a	4: 7415337 ~ 7503443 (+)	processed_transcript	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070314 (cald1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000070314	cald1a	4: 7415337 ~ 7503443 (+)
ENSDARG00000041065	hspb1	5: 3568016 ~ 3584815 (-)
ENSDARG00000007709	adamts8a	5: 30155834 ~ 30176970 (-)
ENSDARG00000059442	smtnb	5: 69289990 ~ 69316206 (-)
ENSDARG00000037782	sox8b	3: 62397718 ~ 62403550 (-)
ENSDARG00000035858	cnn2	2: 24548249 ~ 24554432 (-)
ENSDARG00000029856	cnn3b	2: 15048410 ~ 15075295 (+)
ENSDARG00000078864	lats2	9: 21277846 ~ 21299336 (+)
ENSDARG00000104110	col4a2	9: 8761099 ~ 8882901 (+)
ENSDARG00000105301	sox8a	12: 1072486 ~ 1085227 (-)
ENSDARG00000070682	sdf4	23: 24693533 ~ 24699400 (-)
ENSDARG00000099510	cnn3a	24: 31170362 ~ 31194847 (-)
ENSDARG00000100940	nr5a2	22: 22634007 ~ 22719440 (-)
ENSDARG00000027310	lsp1a	25: 31323970 ~ 31394515 (+)
ENSDARG00000070826	bpgm	25: 20116407 ~ 20127087 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	More-differentiated SHFPs (cluster: 3) Endothelium (cluster: 8)	potential marker potential marker	NA NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	More-differentiated SHFPs (cluster: 3) Endothelium (cluster: 6)	potential marker potential marker	NA NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Smooth muscle cells (cluster: 22)	potential marker	NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000070314

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences