Fish Single-cell RNA Database

GENE ID: ENSDARG00000016739

Symbol	Location	Gene type	Genome version	Species
lrrc4cb	7: 50053339 ~ 50113581 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000016739 (lrrc4cb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000016739	lrrc4cb	7: 50053339 ~ 50113581 (+)
ENSDARG00000068166	whrnb	5: 28999474 ~ 29122834 (-)
ENSDARG00000041926	dlg4a	5: 68529728 ~ 68641353 (-)
ENSDARG00000004322	ush1ga	3: 56882832 ~ 56896702 (-)
ENSDARG00000060115	lrrn1	6: 43076516 ~ 43092175 (-)
ENSDARG00000073713	vav3b	2: 15776156 ~ 15945153 (+)
ENSDARG00000016743	angel2	20: 37920096 ~ 37934315 (-)
ENSDARG00000077367	ntng2a	8: 11993150 ~ 12111461 (+)
ENSDARG00000077567	angel1	17: 52612866 ~ 52643968 (+)
ENSDARG00000039697	shtn1	17: 21311401 ~ 21368775 (-)
ENSDARG00000099034	unc5a	14: 51164056 ~ 51619388 (-)
ENSDARG00000031095	veph1	18: 41313999 ~ 41465606 (+)
ENSDARG00000014891	robo2	15: 39096736 ~ 39228226 (+)
ENSDARG00000039385	dlg4b	23: 44307996 ~ 44332790 (+)
ENSDARG00000087100	ntng2b	21: 3979107 ~ 4032650 (-)
ENSDARG00000075362	whrna	21: 13979033 ~ 14175838 (-)
ENSDARG00000077710	nlgn1	11: 9564154 ~ 9985415 (-)
ENSDARG00000015240	cdkl5	11: 30161168 ~ 30232133 (+)
ENSDARG00000014973	ntng1a	24: 29381946 ~ 29529252 (+)
ENSDARG00000079876	NA	22: 22129358 ~ 22130623 (-)
ENSDARG00000103002	nptna	25: 29315924 ~ 29363934 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000016739

EXPRESSION

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