Fish Single-cell RNA Database

GENE ID: ENSDARG00000068088

Symbol	Location	Gene type	Genome version	Species
tcnba	5: 30617915 ~ 30620625 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000068088 (tcnba), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000036481	tcn2	5: 26795465 ~ 26806100 (+)
ENSDARG00000068088	tcnba	5: 30617915 ~ 30620625 (-)
ENSDARG00000061047	abcg4a	5: 30624183 ~ 30672482 (+)
ENSDARG00000052110	mboat4	5: 66157117 ~ 66160415 (-)
ENSDARG00000062947	amn	3: 56876280 ~ 56877918 (+)
ENSDARG00000023858	ccdc174	6: 40429773 ~ 40435025 (-)
ENSDARG00000070618	tatdn2	6: 40439858 ~ 40449399 (-)
ENSDARG00000032010	slc15a2	9: 37320222 ~ 37339656 (+)
ENSDARG00000100315	slc15a1a	9: 1137430 ~ 1162804 (+)
ENSDARG00000060112	sybu	16: 39146696 ~ 39168840 (+)
ENSDARG00000040076	pycard	16: 41984032 ~ 41990421 (-)
ENSDARG00000091085	lepa	18: 10689772 ~ 10690365 (+)
ENSDARG00000035832	pyyb	12: 10304435 ~ 10315039 (-)
ENSDARG00000091207	mlnr	15: 2976120 ~ 2985599 (-)
ENSDARG00000092916	mlnl	21: 11969603 ~ 11981523 (+)
ENSDARG00000057117	ghsrb	24: 26742226 ~ 26746179 (+)
ENSDARG00000087013	cubn	24: 32035759 ~ 32150276 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000068088

EXPRESSION

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