Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
zgc:175280 | 5: 67812062 ~ 67834257 (+) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Fibroblasts (cluster: 14) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Intesinal epithelial cells (cluster: 17) |
potential marker |
NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Cranial neural crest (cluster: 27) |
potential marker |
NA |
|
GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated |
Enterocytes (cluster: 2) |
potential marker |
NA |
|
GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated |
Brush border cells (cluster: 4) |
potential marker |
NA |
|
GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS |
Brush border cells (cluster: 2) |
potential marker |
NA |
|
GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS |
Enterocytes (cluster: 2) |
potential marker |
NA |
|
GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA |
Brush border cells (cluster: 3) |
potential marker |
NA |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA706197 (24hpf) | embryo | baseline | 24hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver | ||||
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | ||||
GSE150498 (wildtype, untreated) | intestine | baseline | 6dpf, wildtype, untreated | ||||
GSE150498 (wildtype, 2X DSS) | intestine | disease | 6dpf, wildtype, 2X DSS | ||||
GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA | ||||
GSE150498 (nod2-|-, 2X DSS) | intestine | disease | 6dpf, nod2-/-, 2X DSS | ||||
GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | ||||
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | ||||
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |