Fish Single-cell RNA Database

GENE ID: ENSDARG00000115817

Symbol	Location	Gene type	Genome version	Species
si:dkey-46g23.2	3: 3386221 ~ 3398383 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000115817 (si:dkey-46g23.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000046140	zgc:112038	3: 21200763 ~ 21218133 (+)
ENSDARG00000061858	zgc:153968	3: 21225750 ~ 21230668 (+)
ENSDARG00000093384	si:ch211-150d5.3	3: 5297493 ~ 5311659 (+)
ENSDARG00000115817	si:dkey-46g23.2	3: 3386221 ~ 3398383 (-)
ENSDARG00000093845	si:ch211-1f22.12	1: 56992262 ~ 56996143 (+)
ENSDARG00000096670	si:ch211-1f22.16	1: 57040472 ~ 57044846 (+)
ENSDARG00000062309	si:ch211-1f22.14	1: 57050899 ~ 57059786 (+)
ENSDARG00000096671	si:dkey-27j5.10	1: 57132140 ~ 57236167 (+)
ENSDARG00000086166	si:ch211-286b5.9	1: 55348537 ~ 55353978 (+)
ENSDARG00000076900	prozb	1: 144284 ~ 151998 (+)
ENSDARG00000092322	si:ch211-152f2.1	1: 56843411 ~ 56845476 (+)
ENSDARG00000043445	si:ch211-152f2.3	1: 56900580 ~ 56904810 (+)
ENSDARG00000090237	zp2.3	20: 54295213 ~ 54297047 (+)
ENSDARG00000091409	zp2.6	20: 54304800 ~ 54306651 (+)
ENSDARG00000096965	si:dkey-238d18.13	15: 38006366 ~ 38007002 (+)
ENSDARG00000097031	si:ch73-380l3.3	15: 38025319 ~ 38036484 (+)
ENSDARG00000096863	si:ch73-380l3.4	15: 38046435 ~ 38049999 (+)
ENSDARG00000091388	si:ch73-380l3.5	15: 38071874 ~ 38073442 (+)
ENSDARG00000097307	si:dkey-238d18.7	15: 37954666 ~ 37956052 (+)
ENSDARG00000093841	zgc:152936	22: 25453334 ~ 25454523 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000115817

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences