Fish Single-cell RNA Database

GENE ID: ENSDARG00000115205

Symbol	Location	Gene type	Genome version	Species
zgc:171445	3: 3415921 ~ 3428944 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000115205 (zgc:171445), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000016538	zgc:55888	4: 9467049 ~ 9476418 (+)
ENSDARG00000115205	zgc:171445	3: 3415921 ~ 3428944 (-)
ENSDARG00000004898	zp2l2	6: 9945303 ~ 9952103 (-)
ENSDARG00000096619	si:ch211-1f22.10	1: 56955349 ~ 56960001 (+)
ENSDARG00000094524	si:ch211-1f22.11	1: 56972616 ~ 56981521 (+)
ENSDARG00000096623	si:ch211-1f22.13	1: 57004178 ~ 57008386 (+)
ENSDARG00000017984	zgc:172106	1: 55293424 ~ 55299173 (+)
ENSDARG00000069710	vwa10.2	1: 40308077 ~ 40329641 (+)
ENSDARG00000096656	si:ch211-1f22.6	1: 56852400 ~ 56857465 (+)
ENSDARG00000034910	si:ch211-152f2.2	1: 56873359 ~ 56878634 (+)
ENSDARG00000096507	si:ch211-1f22.8	1: 56886214 ~ 56893355 (+)
ENSDARG00000088989	si:dkey-241l7.5	20: 54018005 ~ 54019284 (+)
ENSDARG00000090237	zp2.3	20: 54295213 ~ 54297047 (+)
ENSDARG00000091409	zp2.6	20: 54304800 ~ 54306651 (+)
ENSDARG00000086025	si:dkey-238d18.7	15: 37992275 ~ 37993810 (+)
ENSDARG00000077745	si:ch73-380l3.2	15: 37936458 ~ 37947458 (+)
ENSDARG00000097802	si:dkey-238d18.12	15: 37950556 ~ 37951733 (+)
ENSDARG00000090870	si:ch1073-263o8.2	21: 43630438 ~ 43636631 (-)
ENSDARG00000092026	zgc:173545	11: 18157260 ~ 18158883 (+)
ENSDARG00000034403	zgc:173443	10: 8077969 ~ 8079737 (-)
ENSDARG00000041828	si:dkeyp-28d2.4	24: 12894282 ~ 12918330 (+)
ENSDARG00000087583	zgc:171717	22: 25289360 ~ 25290573 (+)
ENSDARG00000096097	si:dkeyp-98a7.4	22: 25704430 ~ 25705660 (+)
--	sc:d0284	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	NA	NA	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000115205

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences