Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
zgc:103625 | 3: 50069204 ~ 50075190 (+) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Pineal gland (cluster: 23) |
potential marker |
NA |
|
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment |
Retina (cluster: 10) |
potential marker |
NA |
|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Retina (cluster: 11) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Photoreceptor cells (cluster: 16) |
potential marker |
NA |
|
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment |
Retina (cluster: 9) |
potential marker |
NA |
|
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Retina (cluster: 11) |
potential marker |
NA |
|
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg |
Rod opsin (cluster: 11) |
potential marker |
NA |
|
GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment |
Photoreceptor cells (cluster: 3) Photoreceptor cells (cluster: 8) |
potential marker potential marker |
NA NA |
|
GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment |
Photoreceptor cells (cluster: 11) Retinal progenitors (cluster: 4) Photoreceptor cells (cluster: 7) Photoreceptor cells (cluster: 11) Retinal progenitors (cluster: 4) Photoreceptor cells (cluster: 7) |
potential marker potential marker potential marker potential marker potential marker potential marker |
NA NA NA NA NA NA |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
PRJNA734348 (dome, dnmt1) | embryo | growth | 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
PRJNA734348 (shield, dnmt1) | embryo | growth | 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | ||||
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | ||||
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment | ||||
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih | ||||
PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih | ||||
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | ||||
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |