Fish Single-cell RNA Database

GENE ID: ENSDARG00000100694

Symbol	Location	Gene type	Genome version	Species
tnnt2b	6: 54761141 ~ 54796072 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000100694 (tnnt2b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000099870	tnni4a	4: 7391110 ~ 7409313 (+)
ENSDARG00000011961	csrp2	4: 2511629 ~ 2525934 (-)
ENSDARG00000073766	tnni1d	4: 26357221 ~ 26362129 (+)
ENSDARG00000033683	tpma	7: 29951997 ~ 29962080 (+)
ENSDARG00000029995	tnni2b.2	7: 39385540 ~ 39394430 (+)
ENSDARG00000035958	tnni2b.1	7: 39399747 ~ 39406763 (+)
ENSDARG00000011615	mybpc3	7: 31838320 ~ 31899925 (+)
ENSDARG00000104722	myl2a	5: 1589458 ~ 1611199 (+)
ENSDARG00000104587	srl	3: 12128117 ~ 12187245 (-)
ENSDARG00000100694	tnnt2b	6: 54761141 ~ 54796072 (-)
ENSDARG00000030980	csrp1b	6: 54838269 ~ 54845622 (-)
ENSDARG00000052708	tnni1b	6: 54805136 ~ 54826061 (-)
ENSDARG00000019128	tpm4b	2: 55300425 ~ 55337585 (-)
ENSDARG00000036371	acta1a	1: 53945934 ~ 53953532 (+)
ENSDARG00000042535	actc1a	20: 29476852 ~ 29483514 (-)
ENSDARG00000042559	tnni1c	18: 6625348 ~ 6634424 (-)
ENSDARG00000076357	CABZ01102039.1	12: 204095 ~ 212843 (-)
ENSDARG00000005162	tpm3	19: 10985369 ~ 11031394 (-)
ENSDARG00000037539	tnnc1b	23: 20110086 ~ 20112596 (+)
ENSDARG00000011400	tnnc1a	23: 4890693 ~ 4895876 (+)
ENSDARG00000000474	tnni1a	23: 5723090 ~ 5729484 (-)
ENSDARG00000006603	csrp1a	23: 5765514 ~ 5818992 (-)
ENSDARG00000104682	tpm2	10: 6318227 ~ 6375394 (+)
ENSDARG00000023963	tpm4a	22: 15577827 ~ 15602760 (-)
ENSDARG00000092999	tnni4b.1	25: 20077225 ~ 20087924 (+)
ENSDARG00000079111	actc1c	25: 14087045 ~ 14125498 (+)
ENSDARG00000087402	tpm1	25: 33192404 ~ 33250323 (+)
--	zgc:101560	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000100694

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences