Fish Single-cell RNA Database

GENE ID: ENSDARG00000058815

Symbol	Location	Gene type	Genome version	Species
ihhb	6: 7059999 ~ 7082108 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000058815 (ihhb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000031737	pthlha	4: 612363 ~ 626550 (+)
ENSDARG00000043781	psmb10	4: 77207693 ~ 77218637 (-)
ENSDARG00000002952	smo	4: 14971239 ~ 14979937 (+)
ENSDARG00000037362	scube2	7: 28569266 ~ 28611145 (-)
ENSDARG00000067984	gas1b	5: 32360336 ~ 32363372 (-)
ENSDARG00000077298	gas1a	5: 44455754 ~ 44496805 (-)
ENSDARG00000031126	notum1a	3: 57948377 ~ 57979190 (+)
ENSDARG00000058815	ihhb	6: 7059999 ~ 7082108 (-)
ENSDARG00000101244	gli1	6: 59426148 ~ 59505589 (-)
ENSDARG00000055026	ptch2	2: 33969212 ~ 33993636 (-)
ENSDARG00000039051	hhatla	2: 21333529 ~ 21352101 (-)
ENSDARG00000074082	gpc5c	2: 45696743 ~ 45806367 (+)
ENSDARG00000060397	hhip	1: 35790082 ~ 35835863 (+)
ENSDARG00000102506	lrp2a	9: 48415043 ~ 48672254 (+)
ENSDARG00000025641	gli2a	9: 37141836 ~ 37297485 (+)
ENSDARG00000044417	disp1	20: 51489195 ~ 51559419 (-)
ENSDARG00000036999	NA	8: 51050554 ~ 51147594 (+)
ENSDARG00000016404	ptch1	8: 29962635 ~ 30068277 (+)
ENSDARG00000095859	ptch1	8: 29963024 ~ 29966285 (+)
ENSDARG00000042846	disp2	17: 31185276 ~ 31202280 (+)
ENSDARG00000054753	col10a1a	17: 15542077 ~ 15546862 (-)
ENSDARG00000074428	hhat	17: 25777330 ~ 25831569 (-)
ENSDARG00000061328	cdon	18: 44053052 ~ 44129151 (-)
ENSDARG00000037962	psmb7	21: 8341774 ~ 8352095 (+)
ENSDARG00000059046	psmd5	21: 5368130 ~ 5393125 (-)
ENSDARG00000020884	gli2b	11: 43661735 ~ 43713750 (+)
ENSDARG00000005139	hhatlb	24: 20559009 ~ 20572170 (+)
ENSDARG00000052131	gli3	24: 11528270 ~ 11821505 (-)
ENSDARG00000074335	boc	24: 21206243 ~ 21258945 (-)
ENSDARG00000024588	gpc5b	22: 15438513 ~ 15501417 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	NA	NA	NA
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	NA	NA	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture	NA	NA	NA
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture	NA	NA	NA
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture	NA	NA	NA
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000058815

EXPRESSION

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