Fish Single-cell RNA Database

GENE ID: ENSDARG00000070394

Symbol	Location	Gene type	Genome version	Species
uroc1	6: 40045035 ~ 40058686 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070394 (uroc1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000073881	slc41a2b	4: 9055488 ~ 9094690 (+)
ENSDARG00000007366	NA	7: 19389304 ~ 19401501 (+)
ENSDARG00000061145	gfod2	7: 29044888 ~ 29052468 (+)
ENSDARG00000070116	nit1	7: 7495034 ~ 7508747 (+)
ENSDARG00000026376	aco1	7: 71463106 ~ 71486162 (-)
ENSDARG00000002986	gda	5: 25708369 ~ 25723079 (-)
ENSDARG00000061806	si:dkey-13n15.2	5: 21033771 ~ 21044693 (-)
ENSDARG00000054842	hsd17b14	3: 29969143 ~ 29977495 (-)
ENSDARG00000097890	si:ch1073-100f3.2	3: 50032394 ~ 50046004 (-)
ENSDARG00000078195	fhit	6: 54078703 ~ 54080052 (+)
ENSDARG00000070394	uroc1	6: 40045035 ~ 40058686 (-)
ENSDARG00000053483	zgc:113054	6: 43450221 ~ 43474757 (+)
ENSDARG00000062549	acmsd	9: 23244292 ~ 23253870 (-)
ENSDARG00000033539	paics	20: 25618114 ~ 25631256 (-)
ENSDARG00000005518	slc5a9	8: 15254564 ~ 15268932 (+)
ENSDARG00000012534	slc6a6a	8: 7144066 ~ 7195929 (+)
ENSDARG00000070916	dnajc27	17: 33296436 ~ 33309689 (+)
ENSDARG00000077547	tmlhe	21: 43669943 ~ 43695816 (+)
ENSDARG00000033376	chchd4a	11: 34779610 ~ 34783938 (-)
ENSDARG00000070214	slc41a1	11: 37948839 ~ 37997419 (-)
ENSDARG00000045888	acat1	10: 38663917 ~ 38698966 (+)
ENSDARG00000016505	apbb1ip	24: 6040029 ~ 6078222 (-)
ENSDARG00000010186	myo3a	24: 6161037 ~ 6260333 (-)
ENSDARG00000007421	ftcd	22: 12770877 ~ 12786532 (+)
ENSDARG00000017444	hal	25: 7954140 ~ 7974494 (-)
ENSDARG00000021466	ireb2	25: 6228496 ~ 6261693 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	NA	NA	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	NA	NA	NA
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000070394

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences