Fish Single-cell RNA Database

GENE ID: ENSDARG00000053066

Symbol	Location	Gene type	Genome version	Species
tubb1	6: 49881864 ~ 49888418 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000053066 (tubb1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000006260	tuba8l4	6: 6972953 ~ 6976107 (-)
ENSDARG00000036700	si:ch211-114n24.6	6: 6989454 ~ 6993046 (-)
ENSDARG00000038465	stmn3	6: 58543336 ~ 58563582 (+)
ENSDARG00000009505	prelid3b	6: 60112200 ~ 60122081 (+)
ENSDARG00000053066	tubb1	6: 49881864 ~ 49888418 (+)
ENSDARG00000031164	tuba8l2	1: 5402476 ~ 5419116 (+)
ENSDARG00000070155	tuba8l3	9: 7662638 ~ 7673856 (-)
ENSDARG00000094466	si:ch73-199e17.1	9: 7678136 ~ 7684002 (-)
ENSDARG00000060753	pear1	16: 30438041 ~ 30520157 (+)
ENSDARG00000061398	epb41l4b	16: 26601364 ~ 26635305 (+)
ENSDARG00000033655	stmn1b	16: 34523515 ~ 34527206 (+)
ENSDARG00000069305	si:ch211-203k16.3	20: 42978499 ~ 43013017 (+)
ENSDARG00000042708	tuba8l	8: 28345352 ~ 28349859 (-)
ENSDARG00000043932	stmn4l	17: 12698532 ~ 12711195 (+)
ENSDARG00000074289	tuba4l	13: 6245219 ~ 6252514 (-)
ENSDARG00000004169	stmn1a	19: 17205143 ~ 17210928 (-)
ENSDARG00000074660	rilp	15: 28227058 ~ 28247583 (-)
ENSDARG00000059987	dnah12	23: 19506023 ~ 19558556 (-)
ENSDARG00000055216	tuba1c	23: 35690657 ~ 35694461 (-)
ENSDARG00000001889	tuba1a	23: 35708730 ~ 35711398 (+)
ENSDARG00000045367	tuba1b	23: 35713557 ~ 35716519 (+)
ENSDARG00000045014	tuba2	11: 3336524 ~ 3343463 (-)
ENSDARG00000074906	znf831	11: 410870 ~ 426525 (-)
ENSDARG00000104643	tuba7l	10: 44917351 ~ 44924289 (-)
ENSDARG00000098683	zmiz2	10: 45248326 ~ 45341821 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Erythroid cells (cluster: 44)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	Erythroid cells (cluster: 4)	potential marker	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000053066

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences