Fish Single-cell RNA Database

GENE ID: ENSDARG00000004953

Symbol	Location	Gene type	Genome version	Species
mxb	1: 7574351 ~ 7603734 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000004953 (mxb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000088078	usp18	4: 5842433 ~ 5847937 (+)
ENSDARG00000036870	arih1l	7: 13491452 ~ 13514737 (+)
ENSDARG00000027141	ube2l3b	5: 13337507 ~ 13353905 (-)
ENSDARG00000086374	isg15	5: 20112032 ~ 20113284 (+)
ENSDARG00000088069	CR759879.1	5: 61839707 ~ 61858669 (+)
ENSDARG00000054645	si:ch211-51c14.1	3: 30665195 ~ 30685401 (-)
ENSDARG00000025607	ifnphi1	3: 22362687 ~ 22366562 (-)
ENSDARG00000069012	ifnphi2	3: 22341043 ~ 22359119 (-)
ENSDARG00000070676	ifnphi3	3: 22334012 ~ 22380787 (+)
ENSDARG00000104396	trim25	6: 18388327 ~ 18400623 (-)
ENSDARG00000004953	mxb	1: 7574351 ~ 7603734 (-)
ENSDARG00000095673	si:dkey-79f11.8	1: 7946842 ~ 7951002 (-)
ENSDARG00000075785	si:ch73-190m4.1	1: 50613868 ~ 50637221 (+)
ENSDARG00000075887	herc3	1: 50639416 ~ 50691538 (+)
ENSDARG00000074052	si:ch211-281g13.5	1: 49525096 ~ 49530615 (-)
ENSDARG00000074136	slc47a2.2	1: 49532662 ~ 49544601 (-)
ENSDARG00000075389	si:ch211-281g13.4	1: 49547045 ~ 49558223 (-)
ENSDARG00000018553	ifih1	9: 51147380 ~ 51217396 (+)
ENSDARG00000004952	rsad2	17: 35357451 ~ 35361322 (-)
ENSDARG00000056976	ifit16	17: 23598205 ~ 23603263 (-)
ENSDARG00000043584	ifit15	17: 23607195 ~ 23609210 (-)
ENSDARG00000059936	herc4	13: 50387365 ~ 50446872 (-)
ENSDARG00000052396	pkz	13: 50190664 ~ 50200348 (-)
ENSDARG00000003616	arih1	18: 18879733 ~ 18901017 (+)
ENSDARG00000087651	ctslb	12: 16691586 ~ 16720434 (-)
ENSDARG00000090977	ifit12	12: 16989120 ~ 16990896 (-)
ENSDARG00000090537	ifit11	12: 17019905 ~ 17024079 (-)
ENSDARG00000007467	ifit10	12: 17025726 ~ 17028255 (-)
ENSDARG00000008098	ifit9	12: 17033494 ~ 17035339 (-)
ENSDARG00000014907	htra1b	12: 11388724 ~ 11457625 (-)
ENSDARG00000097181	defbl3	15: 5011080 ~ 5016039 (-)
ENSDARG00000073926	synrg	15: 15885849 ~ 15983428 (-)
ENSDARG00000063370	sgk2a	23: 4324625 ~ 4344591 (+)
ENSDARG00000003219	bin2a	23: 33739215 ~ 33753361 (-)
ENSDARG00000071454	crp1	24: 38073223 ~ 38079261 (-)
ENSDARG00000105001	zgc:91999	24: 38269088 ~ 38288883 (-)
ENSDARG00000071355	si:ch211-197g15.7	22: 17475034 ~ 17482810 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	Support cells (cluster: 11)	potential marker	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000004953

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences