Fish Single-cell RNA Database

GENE ID: ENSDARG00000052520

Symbol	Location	Gene type	Genome version	Species
sgms2a	1: 49933652 ~ 49950643 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000052520 (sgms2a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000069169	cerk	4: 27898833 ~ 27953778 (+)
ENSDARG00000061472	gba2	7: 24645186 ~ 24673416 (+)
ENSDARG00000052701	smpd2b	6: 54680730 ~ 54705050 (+)
ENSDARG00000052520	sgms2a	1: 49933652 ~ 49950643 (-)
ENSDARG00000037455	ugt8	1: 20556067 ~ 20593778 (-)
ENSDARG00000053583	cers6	9: 48870122 ~ 48937240 (-)
ENSDARG00000076058	gba	16: 14216581 ~ 14231312 (+)
ENSDARG00000059811	smpd5	16: 53519048 ~ 53542242 (+)
ENSDARG00000037064	galca	20: 4769762 ~ 4793450 (-)
ENSDARG00000079369	si:ch211-212g7.6	20: 20275001 ~ 20312789 (-)
ENSDARG00000010347	acer1	8: 20232421 ~ 20245892 (-)
ENSDARG00000016474	galcb	17: 18889637 ~ 18898115 (-)
ENSDARG00000006877	enpp4	17: 5599014 ~ 5610514 (-)
ENSDARG00000042544	degs2	17: 30894431 ~ 30900380 (+)
ENSDARG00000007347	degs1	13: 502230 ~ 514843 (+)
ENSDARG00000060534	sgpp1	13: 37491804 ~ 37519817 (-)
ENSDARG00000079608	NA	15: 42235449 ~ 42255867 (+)
ENSDARG00000037267	zgc:158263	23: 26733232 ~ 26751278 (+)
ENSDARG00000040523	smpd2a	23: 5565261 ~ 5587934 (+)
ENSDARG00000020730	smpd4	21: 18907102 ~ 18926900 (+)
ENSDARG00000058221	ugcg	10: 11038192 ~ 11094127 (+)
ENSDARG00000076121	smpd1	10: 24709967 ~ 24724388 (-)
ENSDARG00000002365	cers5	22: 5758090 ~ 5822147 (-)
ENSDARG00000098226	smpd3	25: 13068019 ~ 13105310 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Osteoblast (cluster: 7)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Osteoblast (cluster: 6)	potential marker	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	Epidermal cells (cluster: 6)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Cleithrum cells (cluster: 41) Epidermal cells (cluster: 7)	potential marker potential marker	NA NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000052520

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences