Fish Single-cell RNA Database

GENE ID: ENSDARG00000034862

Symbol	Location	Gene type	Genome version	Species
f7	1: 119960 ~ 125246 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000034862 (f7), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000019861	fgl2a	4: 20178694 ~ 20181964 (-)
ENSDARG00000022550	gxylt1b	4: 13892773 ~ 13902188 (-)
ENSDARG00000056795	serpine1	7: 26265584 ~ 26270014 (-)
ENSDARG00000062909	furina	7: 13988075 ~ 14207006 (+)
ENSDARG00000046140	zgc:112038	3: 21200763 ~ 21218133 (+)
ENSDARG00000061858	zgc:153968	3: 21225750 ~ 21230668 (+)
ENSDARG00000044191	gxylt2	6: 44163727 ~ 44193740 (+)
ENSDARG00000005673	f3b	2: 15100742 ~ 15106968 (+)
ENSDARG00000053463	poglut1	1: 28874389 ~ 28890028 (-)
ENSDARG00000034862	f7	1: 119960 ~ 125246 (+)
ENSDARG00000075827	f7i	1: 127250 ~ 134079 (+)
ENSDARG00000088581	f10	1: 135903 ~ 142469 (+)
ENSDARG00000020741	fga	1: 10063501 ~ 10071539 (-)
ENSDARG00000037144	cpb2	1: 29759678 ~ 29764060 (+)
ENSDARG00000034718	tfpia	9: 42420636 ~ 42484448 (-)
ENSDARG00000060197	atp2c1	16: 41585645 ~ 41667101 (-)
ENSDARG00000012467	spint1b	20: 3218893 ~ 3238110 (-)
ENSDARG00000036968	si:ch1073-416d2.3	17: 53292215 ~ 53295507 (+)
ENSDARG00000101385	f8	14: 1007169 ~ 1040736 (+)
ENSDARG00000077231	vwf	18: 7150144 ~ 7228004 (+)
ENSDARG00000061351	tfpi2	19: 40848109 ~ 40855106 (-)
ENSDARG00000069476	spint2	15: 20239141 ~ 20250516 (+)
ENSDARG00000061383	serpinf2b	15: 26540981 ~ 26552652 (-)
ENSDARG00000008953	pofut1	23: 7692042 ~ 7709134 (+)
ENSDARG00000076448	serpinf2a	21: 40092301 ~ 40104916 (+)
ENSDARG00000004296	ambp	10: 10801564 ~ 10824286 (+)
ENSDARG00000100170	pam	10: 5689510 ~ 5787286 (+)
ENSDARG00000029493	f9b	10: 26747755 ~ 26757486 (+)
ENSDARG00000067805	ggcx	10: 7703251 ~ 7723457 (+)
ENSDARG00000099124	f3a	24: 31277360 ~ 31290706 (+)
ENSDARG00000042684	serpinc1	22: 16022211 ~ 16028191 (+)
ENSDARG00000090185	si:dkeyp-73b11.8	25: 26754578 ~ 26758253 (-)
ENSDARG00000019686	fgl2b	25: 21267579 ~ 21273875 (+)
ENSDARG00000076111	CABZ01072254.1	25: 265360 ~ 269284 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Hepatocytes (cluster: 9)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000034862

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences