Fish Single-cell RNA Database

GENE ID: ENSDARG00000052207

Symbol	Location	Gene type	Genome version	Species
c3a.3	1: 56274613 ~ 56320569 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000052207 (c3a.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045708	adm2a	4: 9880647 ~ 9891874 (-)
ENSDARG00000080020	il13ra1	7: 19153320 ~ 19168375 (-)
ENSDARG00000021004	c5	5: 63458263 ~ 63509581 (-)
ENSDARG00000098995	cyp2k6	3: 12816362 ~ 12826387 (+)
ENSDARG00000038297	aspdh	3: 16747317 ~ 16760923 (-)
ENSDARG00000039517	c8b	2: 1478225 ~ 1518360 (-)
ENSDARG00000039516	c8a	2: 1486822 ~ 1499584 (+)
ENSDARG00000096619	si:ch211-1f22.10	1: 56955349 ~ 56960001 (+)
ENSDARG00000094524	si:ch211-1f22.11	1: 56972616 ~ 56981521 (+)
ENSDARG00000096623	si:ch211-1f22.13	1: 57004178 ~ 57008386 (+)
ENSDARG00000017984	zgc:172106	1: 55293424 ~ 55299173 (+)
ENSDARG00000096625	si:ch211-286b5.8	1: 55304374 ~ 55310703 (+)
ENSDARG00000052207	c3a.3	1: 56274613 ~ 56320569 (+)
ENSDARG00000054655	si:ch211-1f22.5	1: 56823437 ~ 56827882 (+)
ENSDARG00000096507	si:ch211-1f22.8	1: 56886214 ~ 56893355 (+)
ENSDARG00000057844	zgc:171470	1: 57497959 ~ 57501299 (-)
ENSDARG00000087148	CR788255.1	1: 55452892 ~ 55453752 (+)
ENSDARG00000022631	cyp2p9	20: 25581627 ~ 25584869 (+)
ENSDARG00000041873	si:dkey-221h15.4	20: 38831588 ~ 38836161 (-)
ENSDARG00000078114	si:ch73-237c6.1	8: 23689992 ~ 23701880 (-)
ENSDARG00000094451	cfp	8: 23672254 ~ 23702295 (-)
ENSDARG00000039579	cfd	13: 13681681 ~ 13684334 (+)
ENSDARG00000010728	scin	19: 31347675 ~ 31372896 (-)
ENSDARG00000086025	si:dkey-238d18.7	15: 37992275 ~ 37993810 (+)
ENSDARG00000068726	masp1	15: 36187434 ~ 36223417 (+)
ENSDARG00000097802	si:dkey-238d18.12	15: 37950556 ~ 37951733 (+)
ENSDARG00000090730	cfbl	21: 27448856 ~ 27461206 (+)
ENSDARG00000100442	cfh	22: 23641801 ~ 23668468 (-)
ENSDARG00000105212	cfhl1	22: 23693195 ~ 23706771 (-)
ENSDARG00000103760	cfhl2	22: 23734001 ~ 23748284 (-)
ENSDARG00000104205	cfhl3	22: 23767557 ~ 23781213 (-)
--	cfi	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Hepatocytes (cluster: 9)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	Pancreas endocrine cells (cluster: 9)	potential marker	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000052207

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences