Fish Single-cell RNA Database

GENE ID: ENSDARG00000020028

Symbol	Location	Gene type	Genome version	Species
cps1	9: 39026311 ~ 39139722 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000020028 (cps1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000022795	golt1ba	4: 16787040 ~ 16792196 (+)
ENSDARG00000059311	dpysl5b	4: 798696 ~ 815871 (-)
ENSDARG00000051889	dhodh	7: 56517402 ~ 56529522 (+)
ENSDARG00000077193	nags	3: 23029484 ~ 23047180 (+)
ENSDARG00000100003	glulb	6: 23809163 ~ 23813893 (+)
ENSDARG00000038293	zgc:103559	6: 27126620 ~ 27139396 (-)
ENSDARG00000099776	glula	2: 18988407 ~ 18992350 (+)
ENSDARG00000077688	cpo	1: 5576151 ~ 5587575 (+)
ENSDARG00000056742	crmp1	1: 14348399 ~ 14364710 (+)
ENSDARG00000101089	gart	1: 960209 ~ 999556 (-)
ENSDARG00000040705	glsb	9: 41273231 ~ 41351426 (-)
ENSDARG00000062147	otc	9: 30268040 ~ 30274412 (-)
ENSDARG00000020028	cps1	9: 39026311 ~ 39139722 (+)
ENSDARG00000079543	dpys	16: 44298902 ~ 44325688 (+)
ENSDARG00000009018	rhbg	16: 29265796 ~ 29277164 (-)
ENSDARG00000033539	paics	20: 25618114 ~ 25631256 (-)
ENSDARG00000003750	pfas	20: 25445826 ~ 25473275 (+)
ENSDARG00000041895	cad	20: 38788319 ~ 38827623 (-)
ENSDARG00000069095	gls2a	8: 21166053 ~ 21184759 (-)
ENSDARG00000011141	dpysl5a	17: 36898874 ~ 36936856 (-)
ENSDARG00000037307	gnpda1	14: 23709134 ~ 23715349 (+)
ENSDARG00000077481	si:dkey-76k16.6	13: 33658871 ~ 33662523 (-)
ENSDARG00000008816	glud1a	13: 22679084 ~ 22699024 (-)
ENSDARG00000008133	foxl1	18: 17483557 ~ 17485419 (-)
ENSDARG00000015399	foxf1	18: 30847237 ~ 30850365 (+)
ENSDARG00000101074	glud1b	12: 25845494 ~ 25881944 (+)
ENSDARG00000057429	arg1	12: 9597151 ~ 9617770 (-)
ENSDARG00000103490	dpysl4	12: 41580783 ~ 41619257 (-)
ENSDARG00000033361	asl	21: 31253048 ~ 31277336 (+)
ENSDARG00000013227	glulc	21: 14768411 ~ 14775724 (-)
ENSDARG00000007024	uox	11: 8160894 ~ 8168011 (-)
ENSDARG00000063665	mat2al	10: 4969634 ~ 4980150 (-)
ENSDARG00000086853	dpyda.3	24: 30521619 ~ 30774116 (+)
ENSDARG00000002917	gls2b	22: 10098446 ~ 10110988 (-)
ENSDARG00000062812	glsa	22: 12831675 ~ 12862415 (-)
ENSDARG00000062781	glsl	25: 19485198 ~ 19521245 (+)
--	ass1	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	Horizontal cells (cluster: 4)	potential marker	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	Horizontal cells (cluster: 9)	potential marker	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000020028

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences