Fish Single-cell RNA Database

GENE ID: ENSDARG00000095863

Symbol	Location	Gene type	Genome version	Species
afp4	16: 45912647 ~ 45917683 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000095863 (afp4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000012076	apoa1a	5: 37978501 ~ 37981521 (+)
ENSDARG00000020364	fbp1b	5: 35458190 ~ 35462126 (+)
ENSDARG00000077737	spsb3a	3: 16018202 ~ 16039619 (-)
ENSDARG00000024669	oser1	6: 52715708 ~ 52723901 (-)
ENSDARG00000103308	mst1	6: 53394125 ~ 53426773 (-)
ENSDARG00000016771	tfa	2: 16780643 ~ 16794710 (+)
ENSDARG00000041490	afp4	16: 45904153 ~ 45910050 (-)
ENSDARG00000095863	afp4	16: 45912647 ~ 45917683 (-)
ENSDARG00000040278	klhl38b	16: 25245857 ~ 25250414 (+)
ENSDARG00000020866	apoa4b.2	16: 23947196 ~ 23948538 (+)
ENSDARG00000092170	apoc1	16: 23972126 ~ 23973721 (+)
ENSDARG00000040298	apoa4b.1	16: 23913943 ~ 23916263 (+)
ENSDARG00000015866	apoa2	16: 23978978 ~ 23980354 (+)
ENSDARG00000092155	apoc2	16: 23984179 ~ 23994642 (+)
ENSDARG00000077559	LO017815.1	16: 55059026 ~ 55074006 (+)
ENSDARG00000069305	si:ch211-203k16.3	20: 42978499 ~ 43013017 (+)
ENSDARG00000090850	serpina1l	20: 10538025 ~ 10541197 (+)
ENSDARG00000022767	apobb.1	20: 31269778 ~ 31285980 (+)
ENSDARG00000103398	fabp1b.2	8: 1009831 ~ 1013283 (+)
ENSDARG00000053133	b3gnt7l	8: 22289320 ~ 22290886 (+)
ENSDARG00000057368	rps8b	8: 18193116 ~ 18200003 (-)
ENSDARG00000086288	scg3	18: 39434589 ~ 39473055 (-)
ENSDARG00000101324	apoa1b	15: 102925 ~ 108414 (-)
ENSDARG00000053853	slc13a2	21: 39100289 ~ 39118502 (+)
ENSDARG00000077487	spsb3b	24: 39186940 ~ 39196916 (+)
ENSDARG00000057159	ankrd29	22: 16418688 ~ 16431139 (+)
ENSDARG00000102456	cfhl4	22: 23598036 ~ 23625372 (-)
ENSDARG00000053973	fetub	22: 37888249 ~ 37900135 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	Brush border cells (cluster: 8)	potential marker	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	Brush border cells (cluster: 4)	potential marker	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	Brush border cells (cluster: 2)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Enterocytes (cluster: 2)	potential marker	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Enterocytes (cluster: 1)	potential marker	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	Brush border cells (cluster: 3)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Brush border cells (cluster: 2)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Brush border cells (cluster: 3)	potential marker	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Hepatocytes (cluster: 37)	potential marker	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000095863

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences