Fish Single-cell RNA Database

GENE ID: ENSDARG00000103398

Symbol	Location	Gene type	Genome version	Species
fabp1b.2	8: 1009831 ~ 1013283 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000103398 (fabp1b.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000031777	pparaa	4: 18609539 ~ 18635005 (-)
ENSDARG00000012076	apoa1a	5: 37978501 ~ 37981521 (+)
ENSDARG00000093159	si:dkeyp-106c3.3	2: 7279646 ~ 7286309 (+)
ENSDARG00000090623	si:dkeyp-106c3.1	2: 7295515 ~ 7412581 (+)
ENSDARG00000006427	fabp2	1: 25848231 ~ 25851575 (+)
ENSDARG00000095863	afp4	16: 45912647 ~ 45917683 (-)
ENSDARG00000002311	fabp11b	16: 16148761 ~ 16152199 (-)
ENSDARG00000020866	apoa4b.2	16: 23947196 ~ 23948538 (+)
ENSDARG00000040298	apoa4b.1	16: 23913943 ~ 23916263 (+)
ENSDARG00000092155	apoc2	16: 23984179 ~ 23994642 (+)
ENSDARG00000095743	sox11b	20: 30032628 ~ 30035326 (-)
ENSDARG00000022767	apobb.1	20: 31269778 ~ 31285980 (+)
ENSDARG00000034650	fabp7b	20: 40369257 ~ 40370736 (-)
ENSDARG00000103398	fabp1b.2	8: 1009831 ~ 1013283 (+)
ENSDARG00000042780	apoba	17: 30704068 ~ 30727966 (+)
ENSDARG00000007697	fabp7a	17: 15433518 ~ 15435887 (+)
ENSDARG00000105261	nfkb1	14: 49811926 ~ 49859823 (-)
ENSDARG00000015662	pla2g12b	13: 4671698 ~ 4683595 (+)
ENSDARG00000023290	fabp3	19: 42955280 ~ 42993306 (+)
ENSDARG00000017299	fabp11a	19: 32166702 ~ 32169161 (+)
ENSDARG00000102004	apoea	19: 10855158 ~ 10859694 (+)
ENSDARG00000043729	plac8.1	10: 11382365 ~ 11385155 (-)
ENSDARG00000040747	tm4sf4	22: 38127467 ~ 38137908 (-)
ENSDARG00000054323	pparab	25: 2198781 ~ 2254112 (+)
ENSDARG00000097236	si:ch73-147o17.1	25: 35348607 ~ 35360154 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000103398

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences