Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
tm4sf4 | 22: 38127467 ~ 38137908 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epithelial cells (cluster: 15) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Intesinal epithelial cells (cluster: 17) |
potential marker |
NA |
|
PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver |
Pancreas duct epithelial cells (cluster: 7) |
potential marker |
NA |
|
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl |
Enterocytes (cluster: 4) |
potential marker |
NA |
|
GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated |
Enterocytes (cluster: 2) |
potential marker |
NA |
|
GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS |
Brush border cells (cluster: 2) Enteroendocrine (cluster: 6) |
potential marker potential marker |
NA NA |
|
GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS |
Enterocytes (cluster: 2) |
potential marker |
NA |
|
GSE150498 (nod2-|-, 2X DSS) | intestine | disease | 6dpf, nod2-/-, 2X DSS |
Brush border cells (cluster: 2) Enteroendocrine (cluster: 6) |
potential marker potential marker |
NA NA |
|
GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA |
Brush border cells (cluster: 3) |
potential marker |
NA |
|
GSE137784 (no HCC) | liver | baseline | 6mpf, male, isolated from the CreLox zebrafish with HCC |
Epidermal cells (cluster: 7) |
potential marker |
NA |
|
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet |
Pancreas duct epithelial cells (cluster: 7) |
potential marker |
NA |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells | ||||
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos | ||||
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo | ||||
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | ||||
GSE150498 (wildtype, untreated) | intestine | baseline | 6dpf, wildtype, untreated | ||||
GSE150498 (wildtype, 2X DSS) | intestine | disease | 6dpf, wildtype, 2X DSS | ||||
GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated | ||||
GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA | ||||
GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC | ||||
GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC | ||||
GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | ||||
GSE123241 (fgf3 siblings) | neuromast | regeneration | 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | ||||
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT | ||||
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |