Fish Single-cell RNA Database

GENE ID: ENSDARG00000020866

Symbol	Location	Gene type	Genome version	Species
apoa4b.2	16: 23947196 ~ 23948538 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000020866 (apoa4b.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000012076	apoa1a	5: 37978501 ~ 37981521 (+)
ENSDARG00000020364	fbp1b	5: 35458190 ~ 35462126 (+)
ENSDARG00000089310	gc	5: 45677781 ~ 45725008 (+)
ENSDARG00000061858	zgc:153968	3: 21225750 ~ 21230668 (+)
ENSDARG00000001354	slc6a22.2	6: 41144155 ~ 41161017 (+)
ENSDARG00000093159	si:dkeyp-106c3.3	2: 7279646 ~ 7286309 (+)
ENSDARG00000090623	si:dkeyp-106c3.1	2: 7295515 ~ 7412581 (+)
ENSDARG00000076838	apom	2: 42228741 ~ 42234561 (-)
ENSDARG00000008969	fgb	1: 10051763 ~ 10059496 (+)
ENSDARG00000006427	fabp2	1: 25848231 ~ 25851575 (+)
ENSDARG00000095863	afp4	16: 45912647 ~ 45917683 (-)
ENSDARG00000020866	apoa4b.2	16: 23947196 ~ 23948538 (+)
ENSDARG00000040298	apoa4b.1	16: 23913943 ~ 23916263 (+)
ENSDARG00000092155	apoc2	16: 23984179 ~ 23994642 (+)
ENSDARG00000022767	apobb.1	20: 31269778 ~ 31285980 (+)
ENSDARG00000075016	apobb.2	20: 53439665 ~ 53470252 (+)
ENSDARG00000034650	fabp7b	20: 40369257 ~ 40370736 (-)
ENSDARG00000059227	fabp1b.1	8: 999421 ~ 1006174 (+)
ENSDARG00000103398	fabp1b.2	8: 1009831 ~ 1013283 (+)
ENSDARG00000015662	pla2g12b	13: 4671698 ~ 4683595 (+)
ENSDARG00000061864	hdlbpb	12: 22404108 ~ 22445061 (+)
ENSDARG00000102004	apoea	19: 10855158 ~ 10859694 (+)
ENSDARG00000099409	zgc:162182	11: 20899029 ~ 20906178 (+)
ENSDARG00000055809	vtg2	22: 24869690 ~ 24880824 (-)
ENSDARG00000053973	fetub	22: 37888249 ~ 37900135 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Enterocytes (cluster: 4)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Enterocytes (cluster: 2)	potential marker	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	Brush border cells (cluster: 8)	potential marker	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	Brush border cells (cluster: 4)	potential marker	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	Brush border cells (cluster: 2)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Enterocytes (cluster: 2)	potential marker	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Enterocytes (cluster: 1)	potential marker	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	Brush border cells (cluster: 3)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Brush border cells (cluster: 2)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Brush border cells (cluster: 3)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000020866

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences