Fish Single-cell RNA Database

GENE ID: ENSDARG00000041706

Symbol	Location	Gene type	Genome version	Species
vgll2a	20: 42431542 ~ 42439896 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000041706 (vgll2a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045594	shisal1a	4: 14826299 ~ 14863510 (+)
ENSDARG00000096473	mcat	4: 18839856 ~ 18850799 (-)
ENSDARG00000016613	mcat	4: 18846624 ~ 18851365 (-)
ENSDARG00000059483	tead1b	7: 65813301 ~ 65924821 (+)
ENSDARG00000015793	creb3l1	7: 38897836 ~ 38954874 (+)
ENSDARG00000063649	tead3b	6: 54576520 ~ 54671696 (+)
ENSDARG00000008740	esf1	1: 51202984 ~ 51219965 (-)
ENSDARG00000023117	gopc	20: 42246948 ~ 42281434 (+)
ENSDARG00000015907	dcbld1	20: 42296256 ~ 42378994 (-)
ENSDARG00000041706	vgll2a	20: 42431542 ~ 42439896 (-)
ENSDARG00000090013	ccdc9b	17: 2479303 ~ 2535682 (-)
ENSDARG00000024561	nolc1	13: 4973211 ~ 4992395 (-)
ENSDARG00000068407	six9	18: 37237714 ~ 37241115 (-)
ENSDARG00000061473	tbkbp1	12: 28574863 ~ 28678323 (+)
ENSDARG00000002795	meis3	15: 6838039 ~ 6863317 (-)
ENSDARG00000074321	tead3a	23: 5499307 ~ 5558256 (+)
ENSDARG00000079201	tshz2	23: 38379627 ~ 38497705 (-)
ENSDARG00000103730	vgll4b	11: 769623 ~ 815216 (+)
ENSDARG00000067719	wwtr1	22: 38049130 ~ 38114599 (+)
ENSDARG00000056979	lhx9	22: 23238790 ~ 23253481 (-)
ENSDARG00000028159	tead1a	25: 16356083 ~ 16431599 (+)
ENSDARG00000067710	shisal1b	25: 5098062 ~ 5189989 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000041706

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences