Fish Single-cell RNA Database

GENE ID: ENSDARG00000008029

Symbol	Location	Gene type	Genome version	Species
mep1a.2	20: 35484070 ~ 35496459 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000008029 (mep1a.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000102340	ptn	4: 1301436 ~ 1360495 (-)
ENSDARG00000022599	dnpep	6: 13896264 ~ 13920394 (+)
ENSDARG00000038822	mrc1b	2: 31515853 ~ 31540922 (-)
ENSDARG00000020890	tmod4	16: 29650698 ~ 29684858 (+)
ENSDARG00000008029	mep1a.2	20: 35484070 ~ 35496459 (+)
ENSDARG00000091813	si:dkey-21a6.5	17: 43519290 ~ 43533095 (-)
ENSDARG00000089050	cuzd1.1	17: 21870044 ~ 21884323 (-)
ENSDARG00000077614	mtres1	13: 32636197 ~ 32641537 (+)
ENSDARG00000057064	enpep	13: 12543634 ~ 12581388 (-)
ENSDARG00000076903	bend3	13: 32641540 ~ 32648416 (-)
ENSDARG00000037883	prcp	15: 11218246 ~ 11303691 (-)
ENSDARG00000060549	ecel1	15: 47008307 ~ 47075260 (+)
ENSDARG00000041644	si:dkey-194e6.1	23: 40872688 ~ 40895168 (-)
ENSDARG00000055100	cxcl12b	22: 26929554 ~ 26945493 (-)
--	si	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Enterocytes (cluster: 2)	potential marker	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000008029

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences