Fish Single-cell RNA Database

GENE ID: ENSDARG00000039669

Symbol	Location	Gene type	Genome version	Species
NA	20: 52492192 ~ 52525680 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000039669 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045846	osgep	4: 5327632 ~ 5333971 (-)
ENSDARG00000100095	anxa1b	5: 65022287 ~ 65037525 (-)
ENSDARG00000025403	ftr83	5: 30741730 ~ 30753167 (+)
ENSDARG00000101043	ppl	3: 36459790 ~ 36481986 (-)
ENSDARG00000004748	zgc:100868	3: 39472342 ~ 39488639 (-)
ENSDARG00000005643	gcat	3: 25990052 ~ 25998243 (+)
ENSDARG00000019808	evpla	6: 23057311 ~ 23082678 (+)
ENSDARG00000012341	capn9	1: 53881844 ~ 53907092 (-)
ENSDARG00000011245	esrp1	16: 26645663 ~ 26676685 (-)
ENSDARG00000095796	si:dkey-87o1.2	16: 17714664 ~ 17719792 (+)
ENSDARG00000026629	gmds	20: 26709009 ~ 26822550 (-)
ENSDARG00000042661	tsta3l2	20: 48739154 ~ 48775067 (+)
ENSDARG00000039666	tsta3	20: 52458765 ~ 52488233 (+)
ENSDARG00000039669	NA	20: 52492192 ~ 52525680 (+)
ENSDARG00000042139	fpgt	8: 17983369 ~ 17987549 (-)
ENSDARG00000002401	gale	17: 24877392 ~ 24890932 (-)
ENSDARG00000056836	si:ch211-125o16.4	17: 22544648 ~ 22552678 (-)
ENSDARG00000103917	znf185	14: 14620830 ~ 14643190 (-)
ENSDARG00000071014	s100u	19: 7575141 ~ 7591062 (+)
ENSDARG00000043128	cldne	15: 2638884 ~ 2640966 (-)
ENSDARG00000068851	rnf183	15: 34886480 ~ 34892695 (-)
ENSDARG00000028096	cldn23a	10: 15046837 ~ 15048781 (-)
ENSDARG00000032650	fuk	25: 7571920 ~ 7591229 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Cranial ganglion (cluster: 22)	potential marker	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	Enveloping layer cells (cluster: 5)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Epidermal cells (cluster: 13)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Epidermal cells (cluster: 14) Mucous secreting cells (cluster: 24) Integument Ionocyte (cluster: 27)	potential marker potential marker potential marker	NA NA NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	Support cells (cluster: 2)	potential marker	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Endothelium (cluster: 7)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (1.25dpf)	embryo	baseline	1.25dpf, FACS sorted sox10:nEOS cells
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000039669

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences