Fish Single-cell RNA Database

GENE ID: ENSDARG00000088989

Symbol	Location	Gene type	Genome version	Species
si:dkey-241l7.5	20: 54018005 ~ 54019284 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000088989 (si:dkey-241l7.5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000016538	zgc:55888	4: 9467049 ~ 9476418 (+)
ENSDARG00000053630	si:dkey-182o15.5	7: 29509255 ~ 29515727 (+)
ENSDARG00000086282	si:ch211-282j17.5	7: 3678848 ~ 3682688 (-)
ENSDARG00000043769	si:ch211-282j17.1	7: 3632351 ~ 3639171 (-)
ENSDARG00000093796	itln2	7: 33136533 ~ 33143009 (+)
ENSDARG00000095326	si:dkey-88n24.3	7: 3878593 ~ 3884424 (-)
ENSDARG00000088711	lgals1l1	3: 28939759 ~ 28946756 (+)
ENSDARG00000054942	lgals2a	3: 28953274 ~ 28961518 (+)
ENSDARG00000033382	grifin	3: 41784542 ~ 41795917 (-)
ENSDARG00000115205	zgc:171445	3: 3415921 ~ 3428944 (-)
ENSDARG00000008835	si:dkey-46g23.5	3: 3432960 ~ 3448095 (-)
ENSDARG00000079425	si:dkey-12f6.5	3: 495748 ~ 506241 (-)
ENSDARG00000038153	lgals2b	6: 603278 ~ 609887 (-)
ENSDARG00000068220	mbl2	2: 37887277 ~ 37889152 (-)
ENSDARG00000077975	si:ch73-343l4.8	1: 55891376 ~ 55896332 (-)
ENSDARG00000076778	si:ch73-343l4.5	1: 55908578 ~ 55918530 (-)
ENSDARG00000038682	zgc:171687	1: 58912051 ~ 58913813 (-)
ENSDARG00000055705	f5	9: 34127005 ~ 34147996 (+)
ENSDARG00000100248	c1r	16: 31662256 ~ 31675736 (-)
ENSDARG00000088989	si:dkey-241l7.5	20: 54018005 ~ 54019284 (+)
ENSDARG00000008075	illr4	19: 40167363 ~ 40175800 (-)
ENSDARG00000087363	si:dkeyp-46h3.6	19: 27561664 ~ 27564458 (-)
ENSDARG00000092887	si:dkeyp-46h3.3	19: 27577099 ~ 27579835 (-)
ENSDARG00000059049	zgc:174904	19: 5690933 ~ 5699703 (-)
ENSDARG00000025903	lgals9l1	15: 31032255 ~ 31043183 (-)
ENSDARG00000088219	zmp:0000000924	10: 23511816 ~ 23519898 (+)
ENSDARG00000086247	si:ch73-189n23.1	22: 25415980 ~ 25417132 (-)
ENSDARG00000096097	si:dkeyp-98a7.4	22: 25704430 ~ 25705660 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured	NA	NA	NA
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture	NA	NA	NA
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000088989

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences