Fish Single-cell RNA Database

GENE ID: ENSDARG00000075932

Symbol	Location	Gene type	Genome version	Species
si:ch73-211l2.3	8: 44475793 ~ 44480456 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000075932 (si:ch73-211l2.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053709	si:ch73-89b15.3	4: 2267641 ~ 2290268 (+)
ENSDARG00000093687	si:dkey-193c22.1	5: 40200818 ~ 40210447 (-)
ENSDARG00000007836	ctsla	5: 44804791 ~ 44810920 (+)
ENSDARG00000011701	ctsll	5: 24305877 ~ 24309667 (+)
ENSDARG00000070668	cd4-1	16: 11911897 ~ 11946139 (-)
ENSDARG00000040251	ctsk	16: 29492749 ~ 29502787 (+)
ENSDARG00000074656	ctss2.1	16: 29509133 ~ 29513434 (+)
ENSDARG00000013771	ctss2.2	16: 29514473 ~ 29519977 (+)
ENSDARG00000009471	nid2b	20: 9643499 ~ 9674877 (-)
ENSDARG00000041705	si:busm1-228j01.6	8: 44373764 ~ 44378410 (-)
ENSDARG00000075932	si:ch73-211l2.3	8: 44475793 ~ 44480456 (+)
ENSDARG00000074510	mhc2bl	8: 36362898 ~ 36370595 (-)
ENSDARG00000088872	si:busm1-228j01.4	8: 44362452 ~ 44363596 (-)
ENSDARG00000104730	si:dkey-33b17.3	8: 36142734 ~ 36146191 (+)
ENSDARG00000055120	ctsba	17: 32622931 ~ 32631514 (+)
ENSDARG00000009087	cd74a	14: 3038473 ~ 3052361 (+)
ENSDARG00000052855	ctso	14: 36752033 ~ 36763302 (-)
ENSDARG00000063095	ctsf	14: 7140997 ~ 7164646 (+)
ENSDARG00000002509	zgc:153911	13: 35974362 ~ 35976986 (-)
ENSDARG00000079155	si:ch211-67f13.8	13: 35983997 ~ 35985772 (-)
ENSDARG00000039150	lgmn	13: 36037970 ~ 36050327 (-)
ENSDARG00000076139	si:dkey-71p21.13	13: 33320063 ~ 33321541 (-)
ENSDARG00000069199	zgc:172120	13: 33342455 ~ 33362191 (-)
ENSDARG00000074235	CR376783.1	13: 44897170 ~ 44997991 (-)
ENSDARG00000058492	si:dkey-30c15.17	18: 7363242 ~ 7374783 (+)
ENSDARG00000041108	ctsh	18: 26422124 ~ 26428525 (+)
ENSDARG00000102234	si:ch211-71n6.4	18: 44886077 ~ 44908479 (-)
ENSDARG00000039173	ctslb	12: 16617138 ~ 16619757 (-)
ENSDARG00000089806	si:dkey-239j18.3	12: 16634442 ~ 16636627 (-)
ENSDARG00000075527	zgc:174154	12: 16758972 ~ 16764751 (-)
ENSDARG00000095744	si:dkey-269i1.4	12: 16874645 ~ 16877136 (-)
ENSDARG00000094559	zgc:174855	12: 16938807 ~ 16941319 (-)
ENSDARG00000079376	zgc:174153	12: 16949391 ~ 16951851 (+)
ENSDARG00000043182	hhla2a.1	10: 35417099 ~ 35437624 (+)
ENSDARG00000088680	hhla2b.1	24: 25244946 ~ 25256670 (-)
--	wu:fd58b11	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Immune cells (cluster: 20)	potential marker	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000075932

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences