Fish Single-cell RNA Database

GENE ID: ENSDARG00000070206

Symbol	Location	Gene type	Genome version	Species
si:zfos-2070c2.1	8: 36377006 ~ 36387387 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070206 (si:zfos-2070c2.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053709	si:ch73-89b15.3	4: 2267641 ~ 2290268 (+)
ENSDARG00000093687	si:dkey-193c22.1	5: 40200818 ~ 40210447 (-)
ENSDARG00000007836	ctsla	5: 44804791 ~ 44810920 (+)
ENSDARG00000011701	ctsll	5: 24305877 ~ 24309667 (+)
ENSDARG00000040251	ctsk	16: 29492749 ~ 29502787 (+)
ENSDARG00000074656	ctss2.1	16: 29509133 ~ 29513434 (+)
ENSDARG00000013771	ctss2.2	16: 29514473 ~ 29519977 (+)
ENSDARG00000009471	nid2b	20: 9643499 ~ 9674877 (-)
ENSDARG00000041705	si:busm1-228j01.6	8: 44373764 ~ 44378410 (-)
ENSDARG00000074510	mhc2bl	8: 36362898 ~ 36370595 (-)
ENSDARG00000070206	si:zfos-2070c2.1	8: 36377006 ~ 36387387 (-)
ENSDARG00000076307	si:zfos-2070c2.3	8: 36397818 ~ 36412936 (-)
ENSDARG00000104730	si:dkey-33b17.3	8: 36142734 ~ 36146191 (+)
ENSDARG00000055120	ctsba	17: 32622931 ~ 32631514 (+)
ENSDARG00000009087	cd74a	14: 3038473 ~ 3052361 (+)
ENSDARG00000052855	ctso	14: 36752033 ~ 36763302 (-)
ENSDARG00000063095	ctsf	14: 7140997 ~ 7164646 (+)
ENSDARG00000039150	lgmn	13: 36037970 ~ 36050327 (-)
ENSDARG00000071168	zmp:0000001138	13: 47803499 ~ 47810394 (-)
ENSDARG00000056330	mhc2dbb	18: 29922939 ~ 29925717 (-)
ENSDARG00000058492	si:dkey-30c15.17	18: 7363242 ~ 7374783 (+)
ENSDARG00000041108	ctsh	18: 26422124 ~ 26428525 (+)
ENSDARG00000102234	si:ch211-71n6.4	18: 44886077 ~ 44908479 (-)
ENSDARG00000095254	si:dkey-239j18.2	12: 16592408 ~ 16595406 (-)
ENSDARG00000039173	ctslb	12: 16617138 ~ 16619757 (-)
ENSDARG00000089806	si:dkey-239j18.3	12: 16634442 ~ 16636627 (-)
ENSDARG00000075527	zgc:174154	12: 16758972 ~ 16764751 (-)
ENSDARG00000095744	si:dkey-269i1.4	12: 16874645 ~ 16877136 (-)
ENSDARG00000094559	zgc:174855	12: 16938807 ~ 16941319 (-)
ENSDARG00000079376	zgc:174153	12: 16949391 ~ 16951851 (+)
ENSDARG00000088680	hhla2b.1	24: 25244946 ~ 25256670 (-)
--	wu:fd58b11	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	Gills (cluster: 8)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000070206

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences