Fish Single-cell RNA Database

GENE ID: ENSDARG00000076250

Symbol	Location	Gene type	Genome version	Species
rasef	8: 49570884 ~ 49606121 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000076250 (rasef), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000079622	frmd5	7: 30135768 ~ 30174882 (-)
ENSDARG00000095930	myha	5: 32246872 ~ 32257316 (+)
ENSDARG00000046091	si:ch211-283g2.1	5: 4150814 ~ 4204601 (-)
ENSDARG00000002405	si:ch211-225b11.1	5: 20786772 ~ 20814588 (-)
ENSDARG00000016733	psat1	5: 69486184 ~ 69499595 (-)
ENSDARG00000093053	vap	1: 9113630 ~ 9115034 (-)
ENSDARG00000056480	cpvl	16: 20496691 ~ 20515806 (+)
ENSDARG00000096654	si:dkey-119m7.8	20: 320415 ~ 322619 (+)
ENSDARG00000076250	rasef	8: 49570884 ~ 49606121 (+)
ENSDARG00000086345	cux2b	8: 4044578 ~ 4327473 (-)
ENSDARG00000059885	frmd3	8: 49617946 ~ 49705058 (-)
ENSDARG00000029668	crim1	17: 38927889 ~ 39185336 (-)
ENSDARG00000091222	si:dkey-190l8.2	17: 30591287 ~ 30605734 (+)
ENSDARG00000061480	si:ch211-132b12.1	18: 40552620 ~ 40565776 (+)
ENSDARG00000094946	si:ch211-132b12.2	18: 40572294 ~ 40583104 (+)
ENSDARG00000002787	tle3a	18: 20225961 ~ 20257511 (+)
ENSDARG00000092930	si:ch211-132b12.4	18: 40609153 ~ 40613189 (+)
ENSDARG00000075942	NA	18: 26460444 ~ 26675699 (-)
ENSDARG00000076393	tmem65	19: 177455 ~ 185614 (+)
ENSDARG00000038278	ptgir	15: 9117330 ~ 9184449 (+)
ENSDARG00000077229	ano8b	11: 5965168 ~ 6001845 (-)
ENSDARG00000061260	si:dkey-202e22.2	11: 34760628 ~ 34779622 (+)
ENSDARG00000002690	rabif	11: 24815667 ~ 24817637 (+)
ENSDARG00000078459	cux1a	10: 32898533 ~ 33156789 (-)
ENSDARG00000004763	hhla2a.2	10: 35439952 ~ 35452191 (+)
ENSDARG00000086254	hhla2b.2	24: 25236381 ~ 25244638 (-)
ENSDARG00000071475	aox5	22: 14083729 ~ 14115316 (-)
--	cux2a	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Xanthophores (cluster: 33)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000076250

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences