Fish Single-cell RNA Database

GENE ID: ENSDARG00000055331

Symbol	Location	Gene type	Genome version	Species
aldh9a1a.2	8: 21082361 ~ 21091961 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000055331 (aldh9a1a.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000032218	acss3	4: 21866851 ~ 21958295 (+)
ENSDARG00000036135	bbox1	7: 34296789 ~ 34315291 (+)
ENSDARG00000059503	NA	7: 55950229 ~ 56038023 (+)
ENSDARG00000035257	akr1a1a	5: 41521043 ~ 41531629 (-)
ENSDARG00000014646	aoc2	3: 32924185 ~ 32934359 (-)
ENSDARG00000052030	akr1a1b	6: 33918813 ~ 33925432 (-)
ENSDARG00000053483	zgc:113054	6: 43450221 ~ 43474757 (+)
ENSDARG00000037061	aldh9a1b	2: 6067371 ~ 6092062 (+)
ENSDARG00000005525	acy3.2	1: 52489962 ~ 52498146 (-)
ENSDARG00000023712	mao	9: 33660964 ~ 33725972 (-)
ENSDARG00000098249	asmt	9: 55730059 ~ 55744713 (-)
ENSDARG00000007959	hibadhb	16: 20871015 ~ 20889516 (+)
ENSDARG00000043403	paox1	8: 15239549 ~ 15250265 (+)
ENSDARG00000055331	aldh9a1a.2	8: 21082361 ~ 21091961 (-)
ENSDARG00000069100	aldh9a1a.1	8: 21094884 ~ 21103522 (-)
ENSDARG00000070874	asmt2	17: 26815021 ~ 26826438 (+)
ENSDARG00000044142	acss1	17: 25833947 ~ 25853922 (+)
ENSDARG00000080010	adh5	14: 43590816 ~ 43602968 (-)
ENSDARG00000087262	zgc:63568	14: 35892802 ~ 35900420 (+)
ENSDARG00000088366	zgc:77938	14: 35901249 ~ 35911982 (+)
ENSDARG00000091211	adh8a	13: 12653975 ~ 12660318 (-)
ENSDARG00000099579	aldh18a1	12: 30788912 ~ 30810171 (+)
ENSDARG00000102906	hibadha	19: 19599528 ~ 19657539 (+)
ENSDARG00000077547	tmlhe	21: 43669943 ~ 43695816 (+)
ENSDARG00000086271	acyp2	11: 43102421 ~ 43104475 (-)
ENSDARG00000092976	si:ch211-127i16.2	10: 19427474 ~ 19523752 (-)
ENSDARG00000061355	aoc1	24: 40001290 ~ 40009446 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Epidermal cells (cluster: 14)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000055331

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences