Fish Single-cell RNA Database

GENE ID: ENSDARG00000086057

Symbol	Location	Gene type	Genome version	Species
plxnd1	8: 54284961 ~ 54286201 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000086057 (plxnd1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000034300	sema3c	4: 22613625 ~ 22652944 (+)
ENSDARG00000019235	sema3aa	4: 11311315 ~ 11368490 (+)
ENSDARG00000076104	sema4bb	7: 30240791 ~ 30267169 (+)
ENSDARG00000079611	sema4c	5: 14529101 ~ 14648433 (-)
ENSDARG00000070735	rnd2	3: 19850937 ~ 19899914 (-)
ENSDARG00000027290	nrp1b	2: 43469241 ~ 43507278 (+)
ENSDARG00000096546	nrp2a	1: 5606460 ~ 5746030 (-)
ENSDARG00000038446	nrp2b	9: 14367570 ~ 14504834 (-)
ENSDARG00000000189	sema6e	16: 30002605 ~ 30271444 (+)
ENSDARG00000011672	sema3b	8: 26586484 ~ 26609259 (-)
ENSDARG00000007560	sema3bl	8: 26522013 ~ 26573963 (+)
ENSDARG00000086057	plxnd1	8: 54284961 ~ 54286201 (+)
ENSDARG00000017369	sema3d	18: 9171778 ~ 9238675 (+)
ENSDARG00000042210	sema3ab	18: 9323211 ~ 9439922 (+)
ENSDARG00000036571	sema3e	18: 9493720 ~ 9576778 (+)
ENSDARG00000011533	sema6dl	18: 40354998 ~ 40387862 (+)
ENSDARG00000074414	sema4ba	18: 25783446 ~ 25905623 (-)
ENSDARG00000067801	CABZ01064472.1	21: 2780907 ~ 2814709 (-)
ENSDARG00000102153	nrp1a	24: 1162325 ~ 1356668 (-)
ENSDARG00000024775	si:ch211-129c21.1	22: 22316855 ~ 22340688 (-)
ENSDARG00000078707	sema7a	25: 26844028 ~ 26867782 (+)
ENSDARG00000102165	sema6a	KN150518.1: 17591 ~ 40355 (-)
--	sema4f	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Epithelial cells (cluster: 12)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000086057

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences