Fish Single-cell RNA Database

GENE ID: ENSDARG00000102288

Symbol	Location	Gene type	Genome version	Species
CABZ01056321.1	17: 47083446 ~ 47090440 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

	Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
	PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Photoreceptor cells (cluster: 16)	potential marker	NA
	GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Retina (cluster: 11)	potential marker	NA
	PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Cone (cluster: 3)	potential marker	NA
	PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Rod (cluster: 2)	potential marker	NA
	GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
	GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
	GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
	PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
	PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
	GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
	PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
	GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
	GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
	GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
	GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
	GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
	GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
	GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
	GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.