Fish Single-cell RNA Database

GENE ID: ENSDARG00000037122

Symbol	Location	Gene type	Genome version	Species
NA	14: 29200772 ~ 29760015 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000037122 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000090624	NA	7: 72882446 ~ 73088964 (+)
ENSDARG00000018270	olfm1a	5: 64732036 ~ 64775757 (+)
ENSDARG00000089292	adgrl1a	3: 47498433 ~ 47876427 (-)
ENSDARG00000075899	NA	2: 1714734 ~ 1904551 (+)
ENSDARG00000061121	adgrl3.1	1: 22943551 ~ 23157583 (-)
ENSDARG00000092057	si:dkey-90l23.1	9: 8372167 ~ 8375675 (+)
ENSDARG00000094478	si:ch1073-75o15.4	9: 8380728 ~ 8385896 (+)
ENSDARG00000036558	col18a1a	9: 41821613 ~ 41979505 (+)
ENSDARG00000075593	trim71	16: 7742658 ~ 7793457 (-)
ENSDARG00000033138	lyrm2	20: 1196386 ~ 1199009 (+)
ENSDARG00000037122	NA	14: 29200772 ~ 29760015 (+)
ENSDARG00000044414	csmd1a	13: 6342410 ~ 6582725 (+)
ENSDARG00000087363	si:dkeyp-46h3.6	19: 27561664 ~ 27564458 (-)
ENSDARG00000093704	si:dkeyp-46h3.8	19: 27546401 ~ 27570363 (-)
ENSDARG00000097446	si:ch211-66i15.5	23: 32406009 ~ 32409928 (+)
ENSDARG00000014053	olfm1b	21: 6751405 ~ 6813561 (+)
ENSDARG00000103251	sh3pxd2b	21: 42717424 ~ 42780082 (+)
ENSDARG00000013653	adgrl4	11: 7383177 ~ 7411436 (-)
ENSDARG00000069356	adgrl2a	11: 7432533 ~ 7737642 (+)
ENSDARG00000067824	cntnap3	10: 2175583 ~ 2393791 (+)
ENSDARG00000094199	si:ch211-226h8.8	22: 25242322 ~ 25243499 (+)
ENSDARG00000093249	si:ch211-226h8.11	22: 25248961 ~ 25250136 (+)
ENSDARG00000090929	si:dkeyp-98a7.3	22: 25681911 ~ 25688794 (+)
ENSDARG00000089525	si:dkeyp-98a7.5	22: 25693295 ~ 25711403 (+)
ENSDARG00000096097	si:dkeyp-98a7.4	22: 25704430 ~ 25705660 (+)
ENSDARG00000107226	si:dkeyp-98a7.3	22: 25693297 ~ 25694563 (+)
ENSDARG00000088895	si:dkeyp-98a7.7	22: 25715925 ~ 25717213 (+)
ENSDARG00000094674	si:dkeyp-98a7.8	22: 25720725 ~ 25721994 (+)
ENSDARG00000058861	ncln	22: 5233396 ~ 5252012 (-)
ENSDARG00000110137	si:dkey-240e12.6	22: 25352530 ~ 25354059 (+)
--	si:ch1073-186i23.1	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Ciliated olfactory sensory neuron (cluster: 5)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000037122

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences