Fish Single-cell RNA Database

GENE ID: ENSDARG00000068586

Symbol	Location	Gene type	Genome version	Species
CU302253.1	14: 50839282 ~ 50892442 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000068586 (CU302253.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000007764	klhdc10	4: 14991789 ~ 15003893 (-)
ENSDARG00000078882	slc22a31	7: 56453646 ~ 56469115 (+)
ENSDARG00000020952	si:ch211-214j8.1	5: 26248380 ~ 26261125 (+)
ENSDARG00000036846	anks4b	3: 60812851 ~ 60827402 (-)
ENSDARG00000014239	esyt1b	6: 52263236 ~ 52336619 (+)
ENSDARG00000029596	trim55a	2: 42114310 ~ 42128714 (-)
ENSDARG00000036494	gstcd	1: 49951707 ~ 50065603 (+)
ENSDARG00000074807	tbrg4	16: 27658977 ~ 27677930 (-)
ENSDARG00000011333	arhgap33	16: 44788331 ~ 44878255 (-)
ENSDARG00000039459	qsox1	8: 14503610 ~ 14554785 (-)
ENSDARG00000024540	tspan36	8: 29726620 ~ 29734951 (+)
ENSDARG00000089050	cuzd1.1	17: 21870044 ~ 21884323 (-)
ENSDARG00000060016	nsd1a	14: 49152341 ~ 49214607 (+)
ENSDARG00000068586	CU302253.1	14: 50839282 ~ 50892442 (-)
ENSDARG00000078691	gigyf1b	10: 22510280 ~ 22533793 (+)
ENSDARG00000078297	ptprh	24: 7714014 ~ 7728409 (-)
ENSDARG00000079560	ptprh	24: 7782313 ~ 7816871 (+)
ENSDARG00000079475	nckipsd	22: 94692 ~ 102265 (+)
ENSDARG00000098791	cdhr5b	25: 4760489 ~ 4780635 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000068586

EXPRESSION

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