Fish Single-cell RNA Database

GENE ID: ENSDARG00000074684

Symbol	Location	Gene type	Genome version	Species
mlsl	14: 46157379 ~ 46173265 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000074684 (mlsl), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000099774	cyb5b	7: 67733759 ~ 67744619 (+)
ENSDARG00000100718	me2	5: 6796291 ~ 6844306 (+)
ENSDARG00000095968	erlin2	5: 35458346 ~ 35478425 (+)
ENSDARG00000038293	zgc:103559	6: 27126620 ~ 27139396 (-)
ENSDARG00000038608	sdhc	2: 44192652 ~ 44199840 (-)
ENSDARG00000004880	acsm3	2: 44725550 ~ 44746723 (-)
ENSDARG00000069029	acss2l	2: 54586647 ~ 54639964 (-)
ENSDARG00000018008	mdh1b	1: 6218632 ~ 6225285 (-)
ENSDARG00000019986	grhprb	1: 19835803 ~ 19845539 (-)
ENSDARG00000017772	mdh1aa	1: 50968908 ~ 50990889 (+)
ENSDARG00000002305	me3	9: 34246384 ~ 34260214 (-)
ENSDARG00000053215	me1	16: 32832213 ~ 33001153 (-)
ENSDARG00000068264	grhpra	14: 44777478 ~ 44790817 (-)
ENSDARG00000074684	mlsl	14: 46157379 ~ 46173265 (-)
ENSDARG00000060500	l2hgdh	13: 36666662 ~ 36680531 (-)
ENSDARG00000007294	aco2	12: 19106571 ~ 19119176 (-)
ENSDARG00000016721	sdha	19: 7276060 ~ 7291733 (-)
ENSDARG00000098782	cratb	19: 18812805 ~ 18826746 (+)
ENSDARG00000090943	CABZ01033205.1	15: 454349 ~ 462783 (-)
ENSDARG00000103364	cs	23: 33907899 ~ 33928316 (+)
ENSDARG00000023648	idh3g	23: 25121998 ~ 25135105 (-)
ENSDARG00000052893	rx3	21: 10756154 ~ 10759223 (+)
ENSDARG00000090814	si:dkey-18a10.3	10: 33561567 ~ 33572441 (-)
ENSDARG00000043371	mdh2	10: 33382858 ~ 33394568 (+)
ENSDARG00000018944	hoga1	22: 34710036 ~ 34732882 (+)
ENSDARG00000030278	idh3a	25: 25766033 ~ 25829109 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000074684

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences