GENE ID: ENSDARG00000069327

Symbol Location Gene type Genome version Species
nkx3.3 13: 40397517 ~ 40401870 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000069327 (nkx3.3), yellow represents other genes.
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    • EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development NA NA NA
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells NA NA NA
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells NA NA NA
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos NA NA NA
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) NA NA NA
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells NA NA NA
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled) NA NA NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development NA NA NA
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells NA NA NA
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos NA NA NA
    PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) NA NA NA
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo NA NA NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development NA NA NA
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells NA NA NA
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos NA NA NA
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells NA NA NA
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells NA NA NA
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos NA NA NA
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo NA NA NA
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) NA NA NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum NA NA NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment NA NA NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment NA NA NA
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment NA NA NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment NA NA NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment NA NA NA
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment NA NA NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment NA NA NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment NA NA NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment NA NA NA
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl NA NA NA
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated NA NA NA
    GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory NA NA NA
    GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory NA NA NA
    PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet NA NA NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment NA NA NA
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) NA NA NA
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) NA NA NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone NA NA NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- NA NA NA
    GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT NA NA NA
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT NA NA NA
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT NA NA NA
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- NA NA NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- NA NA NA
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT NA NA NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells NA NA NA

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