Fish Single-cell RNA Database

GENE ID: ENSDARG00000007561

Symbol	Location	Gene type	Genome version	Species
cdh23	13: 43050562 ~ 43213012 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000007561 (cdh23), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000069431	slc26a4	4: 18782539 ~ 18796539 (+)
ENSDARG00000020924	myo1ca	5: 37785152 ~ 37817140 (+)
ENSDARG00000030311	tmc2b	5: 25624819 ~ 25645593 (-)
ENSDARG00000056386	NA	5: 25652727 ~ 25668787 (-)
ENSDARG00000021137	adgrv1	5: 48683447 ~ 48940127 (+)
ENSDARG00000075292	myo15aa	3: 40056485 ~ 40136743 (-)
ENSDARG00000004322	ush1ga	3: 56882832 ~ 56896702 (-)
ENSDARG00000069423	tmie	2: 2223837 ~ 2279311 (+)
ENSDARG00000042707	cx30.3	9: 21401189 ~ 21405066 (+)
ENSDARG00000030832	otofa	20: 31076488 ~ 31212556 (+)
ENSDARG00000076414	espn	8: 46939391 ~ 47088528 (+)
ENSDARG00000056458	lhfpl5b	8: 23876928 ~ 23885016 (-)
ENSDARG00000070145	magi1a	8: 54055390 ~ 54072665 (+)
ENSDARG00000029482	ush2a	17: 29376854 ~ 29771639 (-)
ENSDARG00000042141	myo6b	17: 36687094 ~ 36842267 (-)
ENSDARG00000054302	ehd4	17: 29195962 ~ 29213710 (-)
ENSDARG00000098257	pcdh15a	13: 41125358 ~ 41546779 (-)
ENSDARG00000069865	grxcr1b	13: 9440326 ~ 9442942 (-)
ENSDARG00000076974	pdzd7a	13: 18701906 ~ 18783485 (+)
ENSDARG00000007561	cdh23	13: 43050562 ~ 43213012 (+)
ENSDARG00000008849	ptprq	18: 6319447 ~ 6406609 (+)
ENSDARG00000099871	myo7aa	18: 3367779 ~ 3473081 (-)
ENSDARG00000076079	ush1gb	12: 46582168 ~ 46598223 (+)
ENSDARG00000071601	pvalb9	12: 17695986 ~ 17698669 (-)
ENSDARG00000071772	si:ch211-253p2.2	12: 6542789 ~ 6551681 (-)
ENSDARG00000008127	pcdh15b	12: 6566233 ~ 6905375 (-)
ENSDARG00000020176	zbtb22a	19: 192741 ~ 205104 (-)
ENSDARG00000061579	myo1cb	15: 28268135 ~ 28352897 (+)
ENSDARG00000102890	clrn1	15: 3947696 ~ 3956906 (-)
ENSDARG00000044632	myo7ab	21: 22237964 ~ 22309466 (+)
ENSDARG00000075362	whrna	21: 13979033 ~ 14175838 (-)
ENSDARG00000077778	adamts9	11: 19157879 ~ 19227802 (+)
ENSDARG00000045023	lhfpl5a	11: 2829812 ~ 2838699 (-)
ENSDARG00000102820	cib2	25: 25666392 ~ 25736958 (-)
ENSDARG00000051876	ush1c	25: 22643954 ~ 22704233 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000007561

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences