Fish Single-cell RNA Database

GENE ID: ENSDARG00000100991

Symbol	Location	Gene type	Genome version	Species
chrna3	18: 50638006 ~ 50648476 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000100991 (chrna3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000001781	tspan11	4: 11172964 ~ 11198055 (+)
ENSDARG00000053136	b2m	4: 12785964 ~ 12795489 (-)
ENSDARG00000098612	chrm2a	4: 1146346 ~ 1284672 (+)
ENSDARG00000034307	chrne	5: 38440099 ~ 38451082 (-)
ENSDARG00000086647	chrng	2: 45081489 ~ 45097743 (+)
ENSDARG00000075564	fam13a	1: 50694971 ~ 50710468 (-)
ENSDARG00000012942	itgb5	9: 22677503 ~ 22748015 (+)
ENSDARG00000017790	chrnb2	16: 22618620 ~ 22678294 (+)
ENSDARG00000070092	NA	16: 40991911 ~ 41004731 (-)
ENSDARG00000069598	chrm5b	20: 29228337 ~ 29229854 (-)
ENSDARG00000100851	gphnb	20: 50852356 ~ 50999404 (+)
ENSDARG00000009131	slc10a4	20: 23431485 ~ 23440955 (-)
ENSDARG00000015887	b2ml	8: 50942240 ~ 50950549 (+)
ENSDARG00000099928	chrm5a	17: 463746 ~ 465285 (-)
ENSDARG00000089076	gphna	17: 33999630 ~ 34185513 (+)
ENSDARG00000100991	chrna3	18: 50638006 ~ 50648476 (+)
ENSDARG00000003420	chrna5	18: 40486457 ~ 40509006 (-)
ENSDARG00000068629	cd151l	18: 30998472 ~ 31016439 (+)
ENSDARG00000014490	tac1	19: 25649626 ~ 25653185 (+)
ENSDARG00000079388	agrn	23: 23485858 ~ 23914687 (+)
ENSDARG00000037588	bhlhe23	23: 17655790 ~ 17657348 (-)
ENSDARG00000077610	hykk.1	22: 34691020 ~ 34698979 (+)
ENSDARG00000074341	hykk.2	22: 35505619 ~ 35531787 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	Neuron (cluster: 6)	potential marker	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Enteric neuron (cluster: 10)	potential marker	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	Neuron (cluster: 15)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000100991

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences