Fish Single-cell RNA Database

GENE ID: ENSDARG00000097826

Symbol	Location	Gene type	Genome version	Species
si:dkey-239b22.2	12: 39034225 ~ 39061186 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000097826 (si:dkey-239b22.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000032639	cd36	4: 22658472 ~ 22671469 (-)
ENSDARG00000070605	b4galnt2.2	3: 23045214 ~ 23060121 (+)
ENSDARG00000053467	gtpbp1	3: 33440615 ~ 33459764 (+)
ENSDARG00000005356	tyro3	17: 10501647 ~ 10553538 (+)
ENSDARG00000087784	si:dkeyp-110a12.4	17: 7595356 ~ 7617558 (+)
ENSDARG00000074150	si:ch211-226h7.5	12: 46231498 ~ 46252062 (-)
ENSDARG00000095409	si:ch211-226h7.8	12: 46152983 ~ 46176115 (-)
ENSDARG00000076196	si:ch211-226h7.6	12: 46209859 ~ 46228023 (-)
ENSDARG00000052779	zgc:153932	12: 46120836 ~ 46145909 (-)
ENSDARG00000097826	si:dkey-239b22.2	12: 39034225 ~ 39061186 (+)
ENSDARG00000036456	anxa4	10: 41159241 ~ 41192881 (+)
ENSDARG00000068923	umodl1	10: 32613706 ~ 32639941 (-)
ENSDARG00000042900	gtpbp1l	22: 14836040 ~ 14854420 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Cranial ganglion (cluster: 22)	potential marker	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000097826

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences