Fish Single-cell RNA Database

GENE ID: ENSDARG00000036227

Symbol	Location	Gene type	Genome version	Species
npvf	19: 19976990 ~ 19980132 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000036227 (npvf), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000077985	kiss2	4: 16827390 ~ 16828499 (+)
ENSDARG00000010841	fshb	7: 32605705 ~ 32612560 (+)
ENSDARG00000003553	gnrhr2	7: 52364748 ~ 52369218 (+)
ENSDARG00000035471	si:dkey-220k22.1	5: 31480342 ~ 31591000 (+)
ENSDARG00000062631	npffr1l2	5: 14165567 ~ 14239078 (-)
ENSDARG00000035609	mtnr1c	5: 22633188 ~ 22665855 (+)
ENSDARG00000067563	kiss1rb	5: 69541667 ~ 69548986 (-)
ENSDARG00000044339	rp2	6: 37513911 ~ 37525879 (-)
ENSDARG00000044326	BX950188.1	6: 36465347 ~ 36542102 (+)
ENSDARG00000113029	si:dkey-58b18.8	2: 23604654 ~ 23609082 (-)
ENSDARG00000002728	kiss1ra	2: 33796207 ~ 33821163 (+)
ENSDARG00000063518	zgc:153913	2: 63298 ~ 66646 (-)
ENSDARG00000090408	NA	1: 7189856 ~ 7448795 (+)
ENSDARG00000086186	opn8a	20: 44250691 ~ 44287488 (+)
ENSDARG00000078536	si:ch211-158d24.2	8: 41533268 ~ 41610205 (+)
ENSDARG00000044900	prlhr2a	8: 37905666 ~ 37950194 (+)
ENSDARG00000056214	gnrh3	17: 20204122 ~ 20207376 (+)
ENSDARG00000099363	lhb	13: 2523032 ~ 2526033 (+)
ENSDARG00000022918	tbcc	12: 34891529 ~ 34892823 (+)
ENSDARG00000036227	npvf	19: 19976990 ~ 19980132 (+)
ENSDARG00000036222	npy	19: 20110699 ~ 20114149 (-)
ENSDARG00000100593	gnrhr1	19: 43213527 ~ 43226124 (-)
ENSDARG00000077497	igsf10	15: 1086656 ~ 1107108 (+)
ENSDARG00000053833	mtnr1ba	15: 41027466 ~ 41064007 (+)
ENSDARG00000044754	gnrh2	21: 15824182 ~ 15828029 (+)
ENSDARG00000092652	qrfpr4	21: 16144014 ~ 16169912 (+)
ENSDARG00000045016	npffl	11: 276057 ~ 279328 (-)
ENSDARG00000075829	kiss1	11: 23311452 ~ 23322182 (-)
ENSDARG00000036458	prlhr2b	10: 41252525 ~ 41260567 (+)
ENSDARG00000010712	npffr1l3	10: 518546 ~ 532628 (+)
ENSDARG00000054203	npffr1l1	10: 40951697 ~ 40968095 (-)
ENSDARG00000071735	prlh2	24: 11105786 ~ 11110087 (+)
--	scg2a	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	NA	NA	NA
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture	NA	NA	NA
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000036227

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences