Fish Single-cell RNA Database

GENE ID: ENSDARG00000056804

Symbol	Location	Gene type	Genome version	Species
si:dkey-40g16.6	15: 21694388 ~ 21702317 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056804 (si:dkey-40g16.6), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000038384	th2	4: 17380578 ~ 17391091 (-)
ENSDARG00000020143	pah	4: 17391680 ~ 17409533 (-)
ENSDARG00000018351	hpda	5: 2815021 ~ 2852285 (+)
ENSDARG00000037121	mat2ab	5: 69199198 ~ 69212184 (-)
ENSDARG00000005154	aspa	5: 62340799 ~ 62356975 (+)
ENSDARG00000055172	si:ch211-256m1.8	3: 25154078 ~ 25165189 (+)
ENSDARG00000017590	nit2	6: 37431169 ~ 37441520 (-)
ENSDARG00000034430	zgc:172121	6: 29288006 ~ 29292887 (+)
ENSDARG00000016494	ddc	16: 8298542 ~ 8342749 (-)
ENSDARG00000014676	bckdhb	16: 5013868 ~ 5105322 (-)
ENSDARG00000033594	ido1	8: 50463227 ~ 50482781 (-)
ENSDARG00000044935	hpdb	8: 34731982 ~ 34742234 (+)
ENSDARG00000079664	zgc:172341	17: 6956696 ~ 6971946 (+)
ENSDARG00000020448	adi1	17: 51224421 ~ 51229737 (+)
ENSDARG00000071429	tdo2a	14: 36738063 ~ 36750593 (+)
ENSDARG00000002219	si:dkey-103j14.5	13: 23233956 ~ 23270576 (-)
ENSDARG00000021681	asrgl1	13: 27768898 ~ 27782764 (+)
ENSDARG00000039605	mat1a	13: 18628920 ~ 18637244 (-)
ENSDARG00000002071	adss2	13: 11489953 ~ 11536951 (-)
ENSDARG00000040555	bckdha	18: 36066389 ~ 36081908 (+)
ENSDARG00000057239	tph2	18: 16989764 ~ 17001056 (-)
ENSDARG00000016375	asns	19: 25656812 ~ 25678002 (-)
ENSDARG00000056804	si:dkey-40g16.6	15: 21694388 ~ 21702317 (-)
ENSDARG00000039077	tyr	15: 43799258 ~ 43818697 (+)
ENSDARG00000012932	mat2b	21: 32061725 ~ 32082149 (-)
ENSDARG00000023176	tdo2b	11: 34084532 ~ 34097437 (-)
ENSDARG00000092976	si:ch211-127i16.2	10: 19427474 ~ 19523752 (-)
ENSDARG00000040334	mat2aa	10: 7810455 ~ 7821686 (-)
ENSDARG00000063665	mat2al	10: 4969634 ~ 4980150 (-)
ENSDARG00000061355	aoc1	24: 40001290 ~ 40009446 (-)
ENSDARG00000029432	tph1a	25: 8139220 ~ 8160030 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	Inflammatory macrophages (cluster: 10)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000056804

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences